PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006281t3 | ||||||||
Common Name | TCM_006281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 360aa MW: 42046.1 Da PI: 4.7017 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46 | 9.6e-15 | 9 | 101 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkv +p+ ++ r+++p + + +g + + t tl++ +g+ v+l +k++gr++++kGW++F ++n +ke D++vF+++g s f + Thecc1EG006281t3 9 FFKVYLPKLSF--ERMSIPPTAVVCSNGLMPMPATATLRNCKGQCRHVEL--NKCDGRMFFEKGWRRFIDDNSIKEEDILVFSYVGCSVFDVK 97 67777444444..568***999754445556899****************..********************************998888777 PP EEEE CS B3 94 vkvf 97 v f Thecc1EG006281t3 98 VYGF 101 7665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.897 | 1 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.28E-19 | 3 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-17 | 5 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.4E-8 | 9 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-13 | 9 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.56E-15 | 9 | 99 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.5E-10 | 224 | 326 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 6.287 | 225 | 328 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.28E-10 | 226 | 326 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.04E-7 | 226 | 326 | No hit | No description |
SMART | SM01019 | 0.021 | 228 | 325 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MSNFEAKNFF KVYLPKLSFE RMSIPPTAVV CSNGLMPMPA TATLRNCKGQ CRHVELNKCD 60 GRMFFEKGWR RFIDDNSIKE EDILVFSYVG CSVFDVKVYG FDGCEKNVSY LVEKGESGEE 120 QGQEDDEEED YGYQEEGEDS VLEMEDDDDD DGYLEEGEDS DLEMKREEEN EEVLDTLTNR 180 RGQRKINKRN SGLHEGLAAV NDEETTSMEV EYEELNPERY VQELNPYFVA RTRLGRGNEL 240 YVPSTVIRDY DLILEDNQEI TFLDPYDRKK IGKVRKWKDR RTCIIGWRSF CNRNRVNQER 300 DVCICEFLLE NENEQKPKFM KVHIIRGKHT KSQKSTLKHY QKKHSDKTLP AIKSKMLLV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007041354.2 | 0.0 | PREDICTED: B3 domain-containing protein REM20 isoform X2 | ||||
TrEMBL | A0A061DX08 | 0.0 | A0A061DX08_THECC; Uncharacterized protein isoform 2 | ||||
STRING | EOX97183 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 4e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006281t3 |
Entrez Gene | 18607239 |
Publications ? help Back to Top | |||
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