PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006116t1

Common Name

TCM_006116

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 1381aa MW: 157099 Da PI: 7.0098

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006116t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	73	3.9e-23	214	274	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 DgynWrK Gq ++ g+++pr YYrC++ gC ++k+v+r +e+p ++ +tY+g+H+++ Thecc1EG006116t1 214 PDGYNWRKHGQTDIVGARYPRTYYRCAHLltvGCLATKQVQRVDENPMIFSVTYSGKHTCN 274 6*************************9999*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.7E-22	211	274	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-21	212	275	IPR003657	WRKY domain
PROSITE profile	PS50811	20.851	213	276	IPR003657	WRKY domain
SMART	SM00774	2.9E-26	213	275	IPR003657	WRKY domain
Pfam	PF03106	9.6E-21	215	273	IPR003657	WRKY domain
SuperFamily	SSF52540	2.92E-5	539	774	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	9.5E-10	670	802	IPR002182	NB-ARC
SuperFamily	SSF52058	2.95E-30	868	1062	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	6.5E-20	870	993	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF13855	2.2E-9	890	949	IPR001611	Leucine-rich repeat
SMART	SM00369	3	913	936	IPR003591	Leucine-rich repeat, typical subtype
SMART	SM00369	9.2	960	983	IPR003591	Leucine-rich repeat, typical subtype
SuperFamily	SSF52058	2.95E-30	1175	1316	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	4.4E-8	1177	1321	IPR032675	Leucine-rich repeat domain, L domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043531	Molecular Function	ADP binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1381 aa Download sequence Send to blast
MLSSFKFINY LSSDTNVPAG FWLVFNHTCR TKNLYLLLLV FFHREMESLV QKNLRKELKR 60 GMELARKLQL HLKASKEARE LHRQILSSQG KALSMLNRRT FSMTKPHSIA HSPSAHNGSP 120 HSDGFDLDFQ QQEFKVKDAS MKSETAESKS TIVASEVSKS PSFLCGSVQS KDSDYDFKDR 180 ELKVNEVSTK RKTMSSWTEL VPSDTDLGLG EPLPDGYNWR KHGQTDIVGA RYPRTYYRCA 240 HLLTVGCLAT KQVQRVDENP MIFSVTYSGK HTCNLASDVM PPRPPQILAH TDTACGVDGN 300 DKQDSKSNLQ SSVYNPHDQT CISSTELMSE LPTFGLNLNV FPEESSESYP VWKDFHGYQV 360 RKNWKLLNRK KDVLLLLSSY PMIMIDKFDS EKWITDVLAI MRDAKSTEKM LFGEKVAEYW 420 DVIMRLHDLS GSLQKLLNVP LMNDIEGVLP GDIVENLYRP ADADSRPLLE VEKIIISGKT 480 SKSRGSPSHS EGAAIEAENE LQPMPARCKI QIEETELSAK ETVPEEIFDS AVDLAVCQIL 540 KCISRGDIRC ITISGRDKKR VIEAIKHHQN IGSKFGYIIE FTVAEHQIVA KVHGVFHLQK 600 GFCLGKYSDS VEYSDNLCSP GILLLMEDDY NKNMNLDHST LPFSININKL LDQIHSDSRF 660 IIFTSKIAAD MEIRMEDHLL SWKLFFRIVG EGFLSPSIQQ IAACMVKECR GNLLAIILMA 720 RSLKKVTDDV QLWELAAQRL TMLPPSQIED IDNVLVNTLT FIWERMNNKT RHCIKLFTRY 780 PEGLAIHRSS VIQRWIWDSL VDTYDEGTHI LQSLVDAFLL NIVELNCVQL RREIYDVLVK 840 LLIPQMHPLY LMQGGLRLIK PPKEEEWDAK EIHLMDNKLY DLPESPKCPS LFALYLQKNL 900 DLMAVPSCFF THMPLLQILD LSHTSIKSLP ESLSSLVKLR ELLLKGCELF IQLPSHVGKL 960 KNLEKLDLDE TQIIDLPVEI GHLSKLKILR VSFYGYVNCS KTWSQRDTII HPGIISGLSE 1020 LIELSIDVDP DDERWNATVK AVIEEACNLK TLRQLNLYLP SIEILWKRRT GSTSLLRYPL 1080 PRFRFTVGNH KQQVISRVPE EVEAHFNNGD KCLKFINGKD IPNEMRTVLN HSTAFFLEGH 1140 ATAKSLSDFG IKNTRRLKFC LLTECNEVQT IIDCAEFSEE QTDALGNLQD LNIYYMKNLE 1200 SIWKGPVHKN CLARLKFLAL HKCPRLSTIF SPDLVANLAN LEELIVEHCP QLTSLVSLIG 1260 HASSNSAPQP NCFLPSLKRI SLLYVPNLVS ISSGLRIAPE LEKIGFYNCP KLKSLSTMEM 1320 SSDHLKGIKG ESRWWEALEW KNSEWGNRLD YLHSIFSPLL KERDVKAQLV EEGIMHHAST 1380 *

Sequence ? help Back to Top

Protein Sequence Length: 1381 aa Download sequence Send to blast

MLSSFKFINY LSSDTNVPAG FWLVFNHTCR TKNLYLLLLV FFHREMESLV QKNLRKELKR  60
GMELARKLQL HLKASKEARE LHRQILSSQG KALSMLNRRT FSMTKPHSIA HSPSAHNGSP  120
HSDGFDLDFQ QQEFKVKDAS MKSETAESKS TIVASEVSKS PSFLCGSVQS KDSDYDFKDR  180
ELKVNEVSTK RKTMSSWTEL VPSDTDLGLG EPLPDGYNWR KHGQTDIVGA RYPRTYYRCA  240
HLLTVGCLAT KQVQRVDENP MIFSVTYSGK HTCNLASDVM PPRPPQILAH TDTACGVDGN  300
DKQDSKSNLQ SSVYNPHDQT CISSTELMSE LPTFGLNLNV FPEESSESYP VWKDFHGYQV  360
RKNWKLLNRK KDVLLLLSSY PMIMIDKFDS EKWITDVLAI MRDAKSTEKM LFGEKVAEYW  420
DVIMRLHDLS GSLQKLLNVP LMNDIEGVLP GDIVENLYRP ADADSRPLLE VEKIIISGKT  480
SKSRGSPSHS EGAAIEAENE LQPMPARCKI QIEETELSAK ETVPEEIFDS AVDLAVCQIL  540
KCISRGDIRC ITISGRDKKR VIEAIKHHQN IGSKFGYIIE FTVAEHQIVA KVHGVFHLQK  600
GFCLGKYSDS VEYSDNLCSP GILLLMEDDY NKNMNLDHST LPFSININKL LDQIHSDSRF  660
IIFTSKIAAD MEIRMEDHLL SWKLFFRIVG EGFLSPSIQQ IAACMVKECR GNLLAIILMA  720
RSLKKVTDDV QLWELAAQRL TMLPPSQIED IDNVLVNTLT FIWERMNNKT RHCIKLFTRY  780
PEGLAIHRSS VIQRWIWDSL VDTYDEGTHI LQSLVDAFLL NIVELNCVQL RREIYDVLVK  840
LLIPQMHPLY LMQGGLRLIK PPKEEEWDAK EIHLMDNKLY DLPESPKCPS LFALYLQKNL  900
DLMAVPSCFF THMPLLQILD LSHTSIKSLP ESLSSLVKLR ELLLKGCELF IQLPSHVGKL  960
KNLEKLDLDE TQIIDLPVEI GHLSKLKILR VSFYGYVNCS KTWSQRDTII HPGIISGLSE  1020
LIELSIDVDP DDERWNATVK AVIEEACNLK TLRQLNLYLP SIEILWKRRT GSTSLLRYPL  1080
PRFRFTVGNH KQQVISRVPE EVEAHFNNGD KCLKFINGKD IPNEMRTVLN HSTAFFLEGH  1140
ATAKSLSDFG IKNTRRLKFC LLTECNEVQT IIDCAEFSEE QTDALGNLQD LNIYYMKNLE  1200
SIWKGPVHKN CLARLKFLAL HKCPRLSTIF SPDLVANLAN LEELIVEHCP QLTSLVSLIG  1260
HASSNSAPQP NCFLPSLKRI SLLYVPNLVS ISSGLRIAPE LEKIGFYNCP KLKSLSTMEM  1320
SSDHLKGIKG ESRWWEALEW KNSEWGNRLD YLHSIFSPLL KERDVKAQLV EEGIMHHAST  1380
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	3e-15	213	273	8	68	OsWRKY45
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970908.1	0.0	PREDICTED: disease resistance protein At4g27190
Refseq	XP_017970909.1	0.0	PREDICTED: disease resistance protein At4g27190
Refseq	XP_017970910.1	0.0	PREDICTED: disease resistance protein At4g27190
TrEMBL	A0A061DY27	0.0	A0A061DY27_THECC; Uncharacterized protein
STRING	EOX96991	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23810.1	5e-29	WRKY family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG006116t1
Entrez Gene	18607103

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]