PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006109t1

Common Name

TCM_006109

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 1450aa MW: 164460 Da PI: 6.9825

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006109t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	75.3	7.5e-24	296	356	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg+nWrKYGqK++ +++fpr YYrC+++ gC ++k+v+r++edp +++ tY+g H+++ Thecc1EG006109t1 296 SDGCNWRKYGQKDILNARFPREYYRCAHRhtqGCFATKEVQREDEDPMFITATYKGMHTCT 356 6************************998899************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.7E-24	287	356	IPR003657	WRKY domain
PROSITE profile	PS50811	19.921	290	358	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-22	291	357	IPR003657	WRKY domain
SMART	SM00774	1.1E-33	295	357	IPR003657	WRKY domain
Pfam	PF03106	1.7E-22	297	355	IPR003657	WRKY domain
SuperFamily	SSF52540	7.96E-7	650	862	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	6.4E-11	767	892	IPR002182	NB-ARC
SuperFamily	SSF52058	4.25E-25	957	1112	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	3.7E-13	957	1108	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	4.25E-25	1244	1395	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.2E-6	1253	1391	IPR032675	Leucine-rich repeat domain, L domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043531	Molecular Function	ADP binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1450 aa Download sequence Send to blast
MVVHLILSFF FFFFSNRDME SWERKNVRNE LRQGRKLAKQ LQANLKRSSS EENPELVQKI 60 VSSFEKALSM LNCSTSSMAA KLQPIAHSSL ARDGSHQSKD PDHDIKKQEF KVKDFFMKRE 120 VTESQPKGLA TEMFKFPPPF SGSFSSAGNL EAFDGKAAEL KPIIIGTEFD HDFMEEHELK 180 VNETFNKSCS VKDESKPAGH AKVMFKSLSD YNLEKKKHTV GDASKKSAAG ESQPTEVEFK 240 KPKSSHSLGE SLPSKDSDYN FKEQELKVNE GSGKRNARRS WTVLVHSDMV QGELPSDGCN 300 WRKYGQKDIL NARFPREYYR CAHRHTQGCF ATKEVQREDE DPMFITATYK GMHTCTLAPD 360 LMPPGPPEIL APLDTVLGAD GNDKKDSQSN LQSSVHSPDN QTCISSTKLT SELPNLGLNL 420 NVFPEKSFKS YPTWKNFYEN EVRKNWKVLN RKKDVLLLLS SYPMIMIDKS DTDKWIIDVL 480 ATMRHVKSTE KILFGVGVAK HWPGMTTLQE LSGRLQKLLD VPLMNDIEGV LPVDLVENLY 540 RTTEADLRPL LEVEQNIISG KTSKSRGSAS NSEGAAMEAE KELQPMPAKC KTLVEDTELP 600 AKGTLNVPEE IFDLAIYLAV RQILKCINRG YIWCITISGR DKKRVLGAVK QHQDIVSEFG 660 YIIVFTVSED QSGANVHGVF HLQKGFWLGG CFDSVDLTHE YFDNLCSPGI LLLTEDDYDK 720 NMNLDQSTLP LLINLNKLVD HKHSDSRFII FTSKMATDME IRMEDHLLSW KLFCRIVGEG 780 LLSPSIQQIA ASLVKECRGN LLAIILTARS LEKVTDDVNL WELAVKRLTM LPPSQIEDTD 840 NVLINALTFI WERMNNKTRH CIKFFTWYPK GQKINRVSLI QHWIQDRLVD THDEGTNIIQ 900 NLVDTSLLNI VELNRVQLRR EIYDVLVNPL ILQMHPFYLL LGRARLIKPP EEEEWDAKVI 960 NLMDNKLSDL PESPSIKSLP ESLSSLVNLR ELLLKGCELF IRLPSHVGEL KNLEKLDLDE 1020 TQIIDLPAEI GQLSKLKILR VSFYGYMNCS KTRLRQDTII PPGTISGLSE LTELSIDVDP 1080 DDERWNATVK DIIEEACNLK TLRQLNLYLP NIEILWKRRT GSASLLHYPL PRFRFTVGYH 1140 KRQVISRVPE EVEAHFNKSN KCLKFVKGKD IPAEMRKVLN HSTAFFLEGH ATARSLSDFG 1200 IENTRLLKCC LLTECNGVKT IIDLSQGGGH SQVYTRGKGK SESLKFPEEQ TDALGNLQDL 1260 NIYYMKNLES IWKGPVHKHC LASLKFLALH KCPRLSTIFS LDLVANLDNL EELIVEHCPQ 1320 LTSLVSPTGH VSSNSTPQPN CFFPSLKRIS LLYVPNLVSI SSGLWIAPEL EKVGFYNCPK 1380 LKSLSAMEMS SDHLTRIKGE SHWWEALEWK NSEWGNPLDY LQSIFSPLIK ERDVKAQLAE 1440 EGIMHHAST*

Sequence ? help Back to Top

Protein Sequence Length: 1450 aa Download sequence Send to blast

MVVHLILSFF FFFFSNRDME SWERKNVRNE LRQGRKLAKQ LQANLKRSSS EENPELVQKI  60
VSSFEKALSM LNCSTSSMAA KLQPIAHSSL ARDGSHQSKD PDHDIKKQEF KVKDFFMKRE  120
VTESQPKGLA TEMFKFPPPF SGSFSSAGNL EAFDGKAAEL KPIIIGTEFD HDFMEEHELK  180
VNETFNKSCS VKDESKPAGH AKVMFKSLSD YNLEKKKHTV GDASKKSAAG ESQPTEVEFK  240
KPKSSHSLGE SLPSKDSDYN FKEQELKVNE GSGKRNARRS WTVLVHSDMV QGELPSDGCN  300
WRKYGQKDIL NARFPREYYR CAHRHTQGCF ATKEVQREDE DPMFITATYK GMHTCTLAPD  360
LMPPGPPEIL APLDTVLGAD GNDKKDSQSN LQSSVHSPDN QTCISSTKLT SELPNLGLNL  420
NVFPEKSFKS YPTWKNFYEN EVRKNWKVLN RKKDVLLLLS SYPMIMIDKS DTDKWIIDVL  480
ATMRHVKSTE KILFGVGVAK HWPGMTTLQE LSGRLQKLLD VPLMNDIEGV LPVDLVENLY  540
RTTEADLRPL LEVEQNIISG KTSKSRGSAS NSEGAAMEAE KELQPMPAKC KTLVEDTELP  600
AKGTLNVPEE IFDLAIYLAV RQILKCINRG YIWCITISGR DKKRVLGAVK QHQDIVSEFG  660
YIIVFTVSED QSGANVHGVF HLQKGFWLGG CFDSVDLTHE YFDNLCSPGI LLLTEDDYDK  720
NMNLDQSTLP LLINLNKLVD HKHSDSRFII FTSKMATDME IRMEDHLLSW KLFCRIVGEG  780
LLSPSIQQIA ASLVKECRGN LLAIILTARS LEKVTDDVNL WELAVKRLTM LPPSQIEDTD  840
NVLINALTFI WERMNNKTRH CIKFFTWYPK GQKINRVSLI QHWIQDRLVD THDEGTNIIQ  900
NLVDTSLLNI VELNRVQLRR EIYDVLVNPL ILQMHPFYLL LGRARLIKPP EEEEWDAKVI  960
NLMDNKLSDL PESPSIKSLP ESLSSLVNLR ELLLKGCELF IRLPSHVGEL KNLEKLDLDE  1020
TQIIDLPAEI GQLSKLKILR VSFYGYMNCS KTRLRQDTII PPGTISGLSE LTELSIDVDP  1080
DDERWNATVK DIIEEACNLK TLRQLNLYLP NIEILWKRRT GSASLLHYPL PRFRFTVGYH  1140
KRQVISRVPE EVEAHFNKSN KCLKFVKGKD IPAEMRKVLN HSTAFFLEGH ATARSLSDFG  1200
IENTRLLKCC LLTECNGVKT IIDLSQGGGH SQVYTRGKGK SESLKFPEEQ TDALGNLQDL  1260
NIYYMKNLES IWKGPVHKHC LASLKFLALH KCPRLSTIFS LDLVANLDNL EELIVEHCPQ  1320
LTSLVSPTGH VSSNSTPQPN CFFPSLKRIS LLYVPNLVSI SSGLWIAPEL EKVGFYNCPK  1380
LKSLSAMEMS SDHLTRIKGE SHWWEALEWK NSEWGNPLDY LQSIFSPLIK ERDVKAQLAE  1440
EGIMHHAST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	2e-16	297	355	10	68	OsWRKY45
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970777.1	0.0	PREDICTED: uncharacterized protein LOC18607098 isoform X7
Refseq	XP_017970778.1	0.0	PREDICTED: uncharacterized protein LOC18607098 isoform X7
TrEMBL	A0A061DY23	0.0	A0A061DY23_THECC; Uncharacterized protein
STRING	EOX96986	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24110.1	1e-24	WRKY DNA-binding protein 30

Link Out ? help Back to Top
Phytozome	Thecc1EG006109t1
Entrez Gene	18607098

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]