PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006103t1

Common Name

TCM_006103

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 1532aa MW: 174365 Da PI: 6.1581

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006103t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	80.6	1.7e-25	359	419	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK++++++fpr+YYrC ++ gC+++k+v+r++edp+v +tY g+H+++ Thecc1EG006103t1 359 ADGYNWRKYGQKDIRNARFPRAYYRCEHRhsqGCKATKQVQRENEDPTVARVTYYGRHTCT 419 6************************988889************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-26	353	419	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-23	357	420	IPR003657	WRKY domain
SMART	SM00774	3.2E-35	358	420	IPR003657	WRKY domain
PROSITE profile	PS50811	21.7	360	421	IPR003657	WRKY domain
Pfam	PF03106	5.2E-24	360	418	IPR003657	WRKY domain
SuperFamily	SSF52540	1.38E-6	711	928	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	4.2E-11	831	953	IPR002182	NB-ARC
SuperFamily	SSF52058	3.33E-33	1020	1213	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.1E-24	1021	1209	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF13855	2.8E-10	1040	1100	IPR001611	Leucine-rich repeat
SMART	SM00369	2.4	1064	1087	IPR003591	Leucine-rich repeat, typical subtype
SMART	SM00369	3.5	1111	1134	IPR003591	Leucine-rich repeat, typical subtype
Gene3D	G3DSA:3.80.10.10	2.9E-8	1322	1477	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	3.33E-33	1326	1487	IPR032675	Leucine-rich repeat domain, L domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043531	Molecular Function	ADP binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1532 aa Download sequence Send to blast
MESWEHKNVT NELRQGRELA RQLQANLKRS SSEENPELVE KIVSSFEKAL SMLNCSTSSM 60 TAKLQPIAHS SLARDGSHQS KDSEHDIKEQ EFAFKDLFME SEVDQSMLEG VSAGSLLSMD 120 FDHPFKDREA LEGFFEYDFK APEFKVNYDV NKSEAAELKP TIVATEMSTS RQFHRGRIQR 180 KDFDYDFKEE QDLEVNEAFN KSAAGELQPT EVEFKKPKSS HYLGKSLPSK DSDYDFKEEQ 240 ELKVNETFNK SCSVKDETKP AGLANVMFKS LSDYKLEKQK LTVSDASKKS AAGEFQPTEV 300 EFKKPKSSHY LGESLPSKDS DYDFKEQELK ANEGYSKRKA RWSGTVSVHS DTVLGGPPAD 360 GYNWRKYGQK DIRNARFPRA YYRCEHRHSQ GCKATKQVQR ENEDPTVARV TYYGRHTCTL 420 APDLMPPKPP EILDPLDAVL GTDGNDKKDS QSNLQSSVHS PDNQSCISST ELTSELPNLG 480 LNLNVFPEKS FESYPMWKKF YENEVRKNWK VLNRKKDVLL LLSSYPMIMI DKSDTDKWII 540 DVVAIMRHVK STEKILFGVG VAKHLPGMTR LQELSGRMQK LLDVPLMNDI EGVLPVDLVE 600 NLYRPTEADL RPLLEVEQNI ISGKTSKSRG SPSNSEGAAM EPEKELQPMP AKCKTLVEDT 660 ELSAKGTLNA PEEIFDLAIY LAVCQILKCI NRGYIWCITI SGRDKKRVLE AIKQHQDIGS 720 YFGYIIVFTV SEDQSGANVH GVFHLQKGFW LGGCFDSVDL THEYFHNLCS PGILLLREDD 780 YDKNMNLDHS PLPFSINLSK LVDHKHSDSR FIIFTSEMAA DMEIRMEDHL LSWKLFCRIV 840 GEGLLSPSIQ QIAASLVKEC RGNLLAVILM ARSLKKVIDD VNLWELAFKR LTMLPPSQIE 900 DIDNVLINAL TFIWEHMNNK TRHCIKLCAW YPKGEKIDRV SLIQHWIQDC LVDTYDEGTN 960 IIQNLVDTFL LNIVELNRVQ LRREIYDVIV NPLILQMHPL YLMLGGARLI KPPEEEEWDA 1020 KVIHLMDNKL SDLPESPRSP SLIALYLQNN LDLMAIPSCF FKHMPLLQIL DLSHTSIKSL 1080 PESISSLVNL RELLLKGCEL LIRLPSHVGE LKNLEKLDLD ETQIVDLPAE IGHLSKLKIL 1140 RVSFYRYMNC SKTRLQQDTI IPPGTISGLS ELTELSIDVD PDDERWNATV KAIIEEACDL 1200 KTLRQLNLYL PNIEILWKRR TGSTSLLHYP LPRFRFIVGY YKQQVVSRVP EEVEAHFNKG 1260 DKCLKFVKGK DIPAEMRMAL NHSTAFFLEG HATARSLSDF GIENTRQLKF CLLTECNEVQ 1320 TIIDCSEFPE EQMDALGNLQ DLTIYYMKNL VSIWRGLVHK RCLASLKFLA LHKCPKLSII 1380 FSPDLVANLA NLEELIVEHC PQLTSLVSLI GHASSSSAPQ PNCFLASLKR ISLLYVPNLV 1440 SISSGLRIAP ELEKVGFYNC PKLKSLSVME ISSENLKVIK GESRWWEALE WKNSEWGNRL 1500 DYLHSIYSPL IKERDVKVQL VEEGIMHQAS T*

Sequence ? help Back to Top

Protein Sequence Length: 1532 aa Download sequence Send to blast

MESWEHKNVT NELRQGRELA RQLQANLKRS SSEENPELVE KIVSSFEKAL SMLNCSTSSM  60
TAKLQPIAHS SLARDGSHQS KDSEHDIKEQ EFAFKDLFME SEVDQSMLEG VSAGSLLSMD  120
FDHPFKDREA LEGFFEYDFK APEFKVNYDV NKSEAAELKP TIVATEMSTS RQFHRGRIQR  180
KDFDYDFKEE QDLEVNEAFN KSAAGELQPT EVEFKKPKSS HYLGKSLPSK DSDYDFKEEQ  240
ELKVNETFNK SCSVKDETKP AGLANVMFKS LSDYKLEKQK LTVSDASKKS AAGEFQPTEV  300
EFKKPKSSHY LGESLPSKDS DYDFKEQELK ANEGYSKRKA RWSGTVSVHS DTVLGGPPAD  360
GYNWRKYGQK DIRNARFPRA YYRCEHRHSQ GCKATKQVQR ENEDPTVARV TYYGRHTCTL  420
APDLMPPKPP EILDPLDAVL GTDGNDKKDS QSNLQSSVHS PDNQSCISST ELTSELPNLG  480
LNLNVFPEKS FESYPMWKKF YENEVRKNWK VLNRKKDVLL LLSSYPMIMI DKSDTDKWII  540
DVVAIMRHVK STEKILFGVG VAKHLPGMTR LQELSGRMQK LLDVPLMNDI EGVLPVDLVE  600
NLYRPTEADL RPLLEVEQNI ISGKTSKSRG SPSNSEGAAM EPEKELQPMP AKCKTLVEDT  660
ELSAKGTLNA PEEIFDLAIY LAVCQILKCI NRGYIWCITI SGRDKKRVLE AIKQHQDIGS  720
YFGYIIVFTV SEDQSGANVH GVFHLQKGFW LGGCFDSVDL THEYFHNLCS PGILLLREDD  780
YDKNMNLDHS PLPFSINLSK LVDHKHSDSR FIIFTSEMAA DMEIRMEDHL LSWKLFCRIV  840
GEGLLSPSIQ QIAASLVKEC RGNLLAVILM ARSLKKVIDD VNLWELAFKR LTMLPPSQIE  900
DIDNVLINAL TFIWEHMNNK TRHCIKLCAW YPKGEKIDRV SLIQHWIQDC LVDTYDEGTN  960
IIQNLVDTFL LNIVELNRVQ LRREIYDVIV NPLILQMHPL YLMLGGARLI KPPEEEEWDA  1020
KVIHLMDNKL SDLPESPRSP SLIALYLQNN LDLMAIPSCF FKHMPLLQIL DLSHTSIKSL  1080
PESISSLVNL RELLLKGCEL LIRLPSHVGE LKNLEKLDLD ETQIVDLPAE IGHLSKLKIL  1140
RVSFYRYMNC SKTRLQQDTI IPPGTISGLS ELTELSIDVD PDDERWNATV KAIIEEACDL  1200
KTLRQLNLYL PNIEILWKRR TGSTSLLHYP LPRFRFIVGY YKQQVVSRVP EEVEAHFNKG  1260
DKCLKFVKGK DIPAEMRMAL NHSTAFFLEG HATARSLSDF GIENTRQLKF CLLTECNEVQ  1320
TIIDCSEFPE EQMDALGNLQ DLTIYYMKNL VSIWRGLVHK RCLASLKFLA LHKCPKLSII  1380
FSPDLVANLA NLEELIVEHC PQLTSLVSLI GHASSSSAPQ PNCFLASLKR ISLLYVPNLV  1440
SISSGLRIAP ELEKVGFYNC PKLKSLSVME ISSENLKVIK GESRWWEALE WKNSEWGNRL  1500
DYLHSIYSPL IKERDVKVQL VEEGIMHQAS T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	8e-20	360	418	10	68	OsWRKY45
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970775.1	0.0	PREDICTED: uncharacterized protein LOC18607098 isoform X5
TrEMBL	A0A061DVZ0	0.0	A0A061DVZ0_THECC; Uncharacterized protein
STRING	EOX96984	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23810.1	4e-26	WRKY family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG006103t1
Entrez Gene	18607096

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]