PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG005875t2

Common Name

TCM_005875

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YA

Protein Properties

Length: 324aa MW: 35000.7 Da PI: 7.7856

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG005875t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	99.6	3.1e-31	155	211	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e ekk k+rkpylheSRh hA+rR+Rg+gGrF Thecc1EG005875t2 155 EEPVYVNAKQYHGILRRRQIRAKAELEKKA-FKARKPYLHESRHLHAMRRARGCGGRF 211 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.3E-36	153	214	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.361	154	214	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.5E-27	156	211	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-23	157	179	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	159	179	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.2E-23	188	211	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MPAKPVNEDQ QLDHGAQSVL QSTVFSEPWW KGVGTNPLGE AASNSSSMEQ LHGSMANGAV 60 QSQAHGGLGN GDGRNGQDRQ HPKHAPSAAP LTLGEHLEPN SQMELVGHSI VLTAYPYSDP 120 QYSGIMTSYG PQTMVSPHLY GMHHARMPLP LQMEEEPVYV NAKQYHGILR RRQIRAKAEL 180 EKKAFKARKP YLHESRHLHA MRRARGCGGR FLNTKKQDND VTSPTSEECM NSDANLSIKS 240 AHLSGSGCRS ANLNSFYDQK EGNGSLVQDL PNAQSLANVN TNGHGLSSTY HSSSNDAVEG 300 NCFGQQRNIV QGNGAQDGAP SIK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	155	219	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007052521.2	0.0	PREDICTED: nuclear transcription factor Y subunit A-4
Refseq	XP_007052522.2	0.0	PREDICTED: nuclear transcription factor Y subunit A-4
Refseq	XP_017981318.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-4
Refseq	XP_017981325.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-4
TrEMBL	A0A061E368	0.0	A0A061E368_THECC; Nuclear transcription factor Y subunit A-1, putative isoform 2
STRING	EOX96677	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.3	2e-36	nuclear factor Y, subunit A1

Link Out ? help Back to Top
Phytozome	Thecc1EG005875t2
Entrez Gene	18614623

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]