PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG005744t1 | ||||||||
Common Name | TCM_005744 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 208aa MW: 23581 Da PI: 7.8125 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.6 | 1.1e-32 | 133 | 191 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+ Thecc1EG005744t1 133 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHS 191 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-34 | 118 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.1E-28 | 125 | 191 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.585 | 128 | 190 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-38 | 133 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-25 | 134 | 190 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MEGERGVPNY ELQVSFSTPQ AIHEMGFVQF EENQAVMSFL APAQSSHQIS QPVNTAASIS 60 NSTNSTAMGF SHNDQVGTLD PKAVNDENCA SNANDGNNSW WRSSASEKSK VKVRRKLREP 120 RFCFQTRSDV DVLDDGYKWR KYGQKVVKNS LHPRSYYRCT HNNCRVKKRV ERLSEDCRMV 180 ITTYEGRHNH SPCDDSNSSE HECFTSF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-27 | 124 | 190 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 8e-27 | 124 | 190 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 111 | 117 | KVRRKLR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00618 | PBM | Transfer from AT2G44745 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017980116.1 | 1e-139 | PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 | ||||
Refseq | XP_022759474.1 | 1e-144 | probable WRKY transcription factor 12 | ||||
Refseq | XP_022759475.1 | 1e-144 | probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 2e-76 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | A0A061DUM5 | 1e-155 | A0A061DUM5_THECC; WRKY family transcription factor | ||||
STRING | EOX96509 | 1e-156 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6045 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44745.1 | 2e-76 | WRKY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG005744t1 |
Entrez Gene | 18614503 |
Publications ? help Back to Top | |||
---|---|---|---|
|