PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG005497t1

Common Name

TCM_005497

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 204aa MW: 22253.3 Da PI: 8.373

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG005497t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.1	8.1e-40	9	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC k+C++apyf ++q +++fa+vhk+FGasn +k+l ++p ++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l+a Thecc1EG005497t1 9 PCGACKFLRRKCIKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKMLLRIPAHRRVDAVVTLCYEALARVRDPVYGCVGHIFTLQQQVVNLQA 101 7*********************9989************************************************************* PP DUF260 93 elallke 99 ela+++ Thecc1EG005497t1 102 ELAYIQG 108 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.263	8	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-38	9	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MSANNGGGPC GACKFLRRKC IKGCIFAPYF DSDQGTAHFA AVHKVFGASN ASKMLLRIPA 60 HRRVDAVVTL CYEALARVRD PVYGCVGHIF TLQQQVVNLQ AELAYIQGRL STLQRLPLLP 120 PSQAQYTSPT SLHSSSEVGS DLVSSSNMSM SFDRPQPQLA SVELTSFPNP FDQEPENEEL 180 QALAREFVSR YLPGVRFRPS TSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-37	5	103	7	104	LOB family transfactor Ramosa2.1
5ly0_B	1e-37	5	103	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007052037.2	1e-149	PREDICTED: LOB domain-containing protein 31
Swissprot	O81322	4e-74	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A061DTV8	1e-148	A0A061DTV8_THECC; LOB domain-containing protein 31
STRING	EOX96194	1e-149	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	1e-71	LOB domain-containing protein 31

Link Out ? help Back to Top
Phytozome	Thecc1EG005497t1
Entrez Gene	18614289

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]