PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005371t2
Common NameTCM_005371
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 290aa    MW: 31795.7 Da    PI: 5.1847
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005371t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-153681148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg++T eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Thecc1EG005371t2 36 RGPFTLEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 81
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-101742IPR009057Homeodomain-like
SuperFamilySSF466891.54E-211788IPR009057Homeodomain-like
PROSITE profilePS500904.171730IPR017877Myb-like domain
PROSITE profilePS5129424.5393185IPR017930Myb domain
SMARTSM007173.0E-143583IPR001005SANT/Myb domain
PfamPF002493.5E-143681IPR001005SANT/Myb domain
CDDcd001672.79E-113881No hitNo description
Gene3DG3DSA:1.10.10.603.9E-214382IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLIHGVYDAQ IITGLLRCGK SCRLRWTNYL RPDIKRGPFT LEEEKLVIQL HGILGNRWAA  60
IASQLPGRTD NEIKNLWNTH LKKRLVCMGL DPQTHEPFTP CGPTTAAPTS PATRHMAQWE  120
SARLEAEARL SRESLLFSSP PLGKPDSDYF LRLWNSEVGE SFRKLNREDK TACQSPISQA  180
SSSTKCGSVS AVTIDICPNI AGSSTPASNQ IEDTACKSFK SCTEDPVDAS DSSCSNESED  240
SSDTALQLLL DFPINNDMSF LENVDTYATS HAMLTDTSFI SPSEGYLKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-21178540108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591697e-44AJ459169.1 Gossypium hirsutum partial myb139 gene, clone pGhMYB139.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051857.10.0PREDICTED: transcription factor MYB80 isoform X2
SwissprotQ9M2D92e-97MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A061DT850.0A0A061DT85_THECC; Myb domain protein 17 isoform 2
STRINGEOX960130.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-90myb domain protein 17
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]