PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG005064t1

Common Name

TCM_005064

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 498aa MW: 55306.2 Da PI: 5.5119

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG005064t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.7e-12	320	365	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L Thecc1EG005064t1 320 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 365 799*********************6.....4*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	5.6E-55	26	208	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	17.015	316	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-17	317	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.05E-14	319	370	No hit	No description
Pfam	PF00010	7.3E-10	320	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	320	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.7E-16	322	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MEELIISPSS SSSLVSFSQE TPPSTLQQRL QFVIQSQQDW WAYAIFWQTS NDEHGRLFLT 60 WGDGHFQGTK DTSPKLGANI SNIPGLNNER RKVMKGIQAL IGDNHDIDMS MIDGTDITDA 120 EWFYVMSLTR SFSAGDGIPG KALSTGSLVW LTGAHELQFY NCERAREAQM HAIETLVCIP 180 TSCGVLELGS SEMIRENWGL VQQVKSVFGS DLIGLVPKQS NPNPNLTPGP IQFLDRNISF 240 ADIGIIAGVQ EEDASPDNRT KQENHNNQTK KDSTKPGQSS YVDSEHSDSD CPLLAMNNIE 300 KRTPKKRGRK PGLGRETPLN HVEAERQRRE KLNHRFYALR AVVPNVSRMD KASLLSDAVS 360 YINELKAKIE ELESQLQREC KKVKVEMVDA MDNQSTTTSV DQAARPSNSS SGTAGSGGLE 420 FDIKIMGNDA MIRVQSENVN YPSARLMIAL RDLEFQVHHA SMSCVNELML QDIVVRVPDG 480 LRTEEGLKSA LLRRLEQ*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MEELIISPSS SSSLVSFSQE TPPSTLQQRL QFVIQSQQDW WAYAIFWQTS NDEHGRLFLT  60
WGDGHFQGTK DTSPKLGANI SNIPGLNNER RKVMKGIQAL IGDNHDIDMS MIDGTDITDA  120
EWFYVMSLTR SFSAGDGIPG KALSTGSLVW LTGAHELQFY NCERAREAQM HAIETLVCIP  180
TSCGVLELGS SEMIRENWGL VQQVKSVFGS DLIGLVPKQS NPNPNLTPGP IQFLDRNISF  240
ADIGIIAGVQ EEDASPDNRT KQENHNNQTK KDSTKPGQSS YVDSEHSDSD CPLLAMNNIE  300
KRTPKKRGRK PGLGRETPLN HVEAERQRRE KLNHRFYALR AVVPNVSRMD KASLLSDAVS  360
YINELKAKIE ELESQLQREC KKVKVEMVDA MDNQSTTTSV DQAARPSNSS SGTAGSGGLE  420
FDIKIMGNDA MIRVQSENVN YPSARLMIAL RDLEFQVHHA SMSCVNELML QDIVVRVPDG  480
LRTEEGLKSA LLRRLEQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	9e-33	25	208	8	192	Transcription factor MYC3
4rqw_B	9e-33	25	208	8	192	Transcription factor MYC3
4rs9_A	9e-33	25	208	8	192	Transcription factor MYC3
4yz6_A	9e-33	25	208	8	192	Transcription factor MYC3
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007051457.2	0.0	PREDICTED: transcription factor bHLH14
TrEMBL	A0A061DS37	0.0	A0A061DS37_THECC; Basic helix-loop-helix DNA-binding family protein
STRING	EOX95614	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3039	21	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	9e-91	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG005064t1
Entrez Gene	18613913

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]