PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG005009t1

Common Name

TCM_005009

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 463aa MW: 52277.9 Da PI: 4.5329

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG005009t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	127.6	9.9e-40	44	174	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 G+rFhPtd el+++yLk+k g++ + ++i+ev di+ +ePw+Lp ++++++++ wyfF + + ky++++r +r+t++gyWk tg+ ++v Thecc1EG005009t1 44 TGYRFHPTDFELLHYYLKNKNLGRDALV-QAIAEVeDICGLEPWELPghSNIHSGDQVWYFFYRPNYKYRNSTRIKRTTNEGYWKRTGNPRKV 135 7**********************877.7799998*******6448888999******************************** PP NAM 93 lsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128 +++ ++++g k+tLvfykg ++ + +kt W++hey+l Thecc1EG005009t1 136 MARdLETEIGEKRTLVFYKGrvSDDNKNKTGWIIHEYEL 174 955667********8843566788*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	44.317	42	192	IPR003441	NAC domain
SuperFamily	SSF101941	5.49E-41	43	192	IPR003441	NAC domain
Pfam	PF02365	1.2E-21	44	174	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MRNRKGYQII QPITNEERFS NYYCYYLFWV AVGYYLWKKI LSITGYRFHP TDFELLHYYL 60 KNKNLGRDAL VQAIAEVEDI CGLEPWELPG HSNIHSGDQV WYFFYRPNYK YRNSTRIKRT 120 TNEGYWKRTG NPRKVMARDL ETEIGEKRTL VFYKGRVSDD NKNKTGWIIH EYELTATLPN 180 QTTFILCKLK KKYGKAEVPC IEEGQSSHDL PPNLGNYIAN NAIPAEAASC FTDQSDPNEL 240 LAQLESFNYH DGLEYQSTEL WDSYLVGDVP TNEGSNLTFN FGNHVAENAI PNDQLKPSDE 300 APIQQEVPQD QSSTNEQDNN FGNLVPADET SNQHKLVVEN DGSTMPSTIQ NPIVAESGQM 360 DLSNLGGAST DELFAELDAL PEVQGNSIGQ GFDDWVSLAD IGNYLNIPNG SDNQSCTNEE 420 KNPTATNGGC SLPIAGMMES PYPINPSRKR LRTDCEGFGW DK*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MRNRKGYQII QPITNEERFS NYYCYYLFWV AVGYYLWKKI LSITGYRFHP TDFELLHYYL  60
KNKNLGRDAL VQAIAEVEDI CGLEPWELPG HSNIHSGDQV WYFFYRPNYK YRNSTRIKRT  120
TNEGYWKRTG NPRKVMARDL ETEIGEKRTL VFYKGRVSDD NKNKTGWIIH EYELTATLPN  180
QTTFILCKLK KKYGKAEVPC IEEGQSSHDL PPNLGNYIAN NAIPAEAASC FTDQSDPNEL  240
LAQLESFNYH DGLEYQSTEL WDSYLVGDVP TNEGSNLTFN FGNHVAENAI PNDQLKPSDE  300
APIQQEVPQD QSSTNEQDNN FGNLVPADET SNQHKLVVEN DGSTMPSTIQ NPIVAESGQM  360
DLSNLGGAST DELFAELDAL PEVQGNSIGQ GFDDWVSLAD IGNYLNIPNG SDNQSCTNEE  420
KNPTATNGGC SLPIAGMMES PYPINPSRKR LRTDCEGFGW DK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-22	45	197	20	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-22	45	197	20	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-22	45	197	20	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-22	45	197	20	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-22	45	197	23	173	NAC domain-containing protein 19
3swm_B	2e-22	45	197	23	173	NAC domain-containing protein 19
3swm_C	2e-22	45	197	23	173	NAC domain-containing protein 19
3swm_D	2e-22	45	197	23	173	NAC domain-containing protein 19
3swp_A	2e-22	45	197	23	173	NAC domain-containing protein 19
3swp_B	2e-22	45	197	23	173	NAC domain-containing protein 19
3swp_C	2e-22	45	197	23	173	NAC domain-containing protein 19
3swp_D	2e-22	45	197	23	173	NAC domain-containing protein 19
4dul_A	2e-22	45	197	20	170	NAC domain-containing protein 19
4dul_B	2e-22	45	197	20	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973800.1	0.0	PREDICTED: uncharacterized protein LOC18613866
TrEMBL	A0A061DRU7	0.0	A0A061DRU7_THECC; Nam protein 1, putative
STRING	EOX95534	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19731	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02230.1	5e-34	NAC domain containing protein 4

Link Out ? help Back to Top
Phytozome	Thecc1EG005009t1
Entrez Gene	18613866

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]