PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004878t1
Common NameTCM_004878
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 298aa    MW: 33830.4 Da    PI: 5.2565
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004878t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-172370148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd  l+ +v+ +G g+W++ ar  g++Rt+k+c++rw++yl
  Thecc1EG004878t1 23 KGPWTEEEDSMLKAYVNIHGEGRWNSAARLSGLKRTGKSCRLRWLNYL 70
                      79********************************************97 PP
2Myb_DNA-binding50.25.7e-1676119146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ + eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Thecc1EG004878t1  76 RGNISLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
                       78899*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.0621874IPR017930Myb domain
SuperFamilySSF466891.12E-3020117IPR009057Homeodomain-like
SMARTSM007171.3E-142272IPR001005SANT/Myb domain
PfamPF002493.3E-152370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-212477IPR009057Homeodomain-like
CDDcd001676.72E-112570No hitNo description
PROSITE profilePS5129419.3275125IPR017930Myb domain
SMARTSM007172.6E-1475123IPR001005SANT/Myb domain
PfamPF002499.7E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2278124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDVYDRGLIF ETPQSEEEMD VRKGPWTEEE DSMLKAYVNI HGEGRWNSAA RLSGLKRTGK  60
SCRLRWLNYL RPEVRRGNIS LEEQLLILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR  120
VQKQAKQLKC EVNSKQFRDA MRYVWIPRLI ERIRATSESP SGQPSSSSTT TYMNSSSNIT  180
TSQITYANTT GSVQVDPSLL PEVSGTSSDS LDTQVSSVSD LTDCYNPQSA SNNPNNLQKG  240
SGLYPENLAG TWRRDGGIDF QATEEQSNGW LGGGDSMESV WNEENIWFLQ QQLHDEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-242012524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3135410.0KF313541.1 Firmiana danxiaensis microsatellite a6974_SSR90 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051208.20.0PREDICTED: transcription factor MYB108
SwissprotQ9FGY33e-80MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A061DRM10.0A0A061DRM1_THECC; Myb domain protein 2, putative
STRINGEOX953650.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.18e-77myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]