PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG003548t1 | ||||||||
Common Name | TCM_003548 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 25380.6 Da PI: 9.3049 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 108 | 7.4e-34 | 17 | 112 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++r+kC ++C+lapyfpa+++++f++vhk+FG+sn +k+++++++ee r+++++sl++eA +r++dPv G +g ++k+ ++l k+ Thecc1EG003548t1 17 ACAACKHQRKKCDENCILAPYFPADRSREFQAVHKVFGVSNATKIVRNANTEEdRKRVADSLIWEAFCRQKDPVLGPYGEYRKIYEELTLYKS 109 7************************************************77766*******************************99998887 PP DUF260 93 ela 95 + + Thecc1EG003548t1 110 QNQ 112 765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.017 | 16 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-32 | 17 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MQRNNNNGVA AAGVHPACAA CKHQRKKCDE NCILAPYFPA DRSREFQAVH KVFGVSNATK 60 IVRNANTEED RKRVADSLIW EAFCRQKDPV LGPYGEYRKI YEELTLYKSQ NQMMLLQVQG 120 RGDEAAAAAA AAFKMPPAVA EWNNNSNKRI DVKGAFNNAA LRYDHGDSLV HFTTYGYPSQ 180 SDKPAVQEKG IHNATTLVPL QYYASGNLNL PTSHFQRKTT STPLHPVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-17 | 18 | 95 | 12 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-17 | 18 | 95 | 12 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021281303.1 | 1e-152 | LOW QUALITY PROTEIN: LOB domain-containing protein 28 | ||||
TrEMBL | A0A061DQ45 | 1e-172 | A0A061DQ45_THECC; LOB domain-containing protein 2 | ||||
STRING | EOX94171 | 1e-173 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10539 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-40 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG003548t1 |
Entrez Gene | 18612955 |
Publications ? help Back to Top | |||
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