PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG003056t5 | ||||||||
Common Name | TCM_003056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 728aa MW: 81768.5 Da PI: 6.7192 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.2 | 1.8e-19 | 588 | 683 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W++++++ ++ks++y+l+ ++ +Fv+ ngL+egDf+v++ ++ + Thecc1EG003056t5 588 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRTNGLQEGDFIVIY--SDvK 677 599************************999999********7778*******99777777777777.*******************9..4446 PP EE..EE CS B3 89 efelvv 94 + ++++ Thecc1EG003056t5 678 CSKYLI 683 666665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.348 | 587 | 689 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.4E-18 | 587 | 689 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-22 | 588 | 681 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-15 | 588 | 681 | IPR003340 | B3 DNA binding domain |
CDD | cd10015 | 5.27E-36 | 588 | 686 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-26 | 588 | 695 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 728 aa Download sequence Send to blast |
MKGVQQHLRC EDLQAGARNE ANPSGFDAPE VERVMGTEER EIWLDRQQDD LLDVNDASIF 60 YGDFPPLPDF PCMSSSSSSS STPALVKAFA CSSSASTASS CSSAASWAVL KSDADEDVER 120 KNNCHGHHHH HHHHHHHHHH NHHHHHGQHD LVDGTPAALS STVSMEILQP SDHVMHGVDC 180 MDVMENFGYM DLLDNNDFFD PSSIFQHDDT GLEEFQQEQK PQQEQSQQPE QEVPTIYSKN 240 EETQEEKSSD DLAMVFLEWL KTNKETVSAE DLRRVKIKKA TIECAARRLG GGKEAMKQLL 300 KLILEWVQTN HLQKRRIKES ASNNNIDIPY QYQDNFQNPN PNPNPNSNPN LSCDSGPPPE 360 PNSCFSQPPW IPQPTYVTDP VAVVAGFAPT VGYMGDPFLN GAPNINSHPY QPPTDYPMLD 420 SAQTWPPSQF ALASQYNSFP DNNLHPAPHQ PSAFPGYGNQ YPYQYIQRHN NEERLVRLGS 480 SATKEARKKR MARQRRFAPH HRNHNYHNNQ QSQHQNQSVD QHVRLIKDNC AAAAQANSGN 540 WVYWPAVACG MASNPPLLPG DVPVVHPVDR PSMQGQTYQR HVASDRRQKV LKQSDVGNLG 600 RIVLPKKEAE THLPELEARD GISIAMEDIG TSRVWNMRYR FWPNNKSRMY LLENTGDFVR 660 TNGLQEGDFI VIYSDVKCSK YLIRGVKVRQ SGPKSETKRP GKSQKNQHSN SPAAAAVNGS 720 SSSPIKQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 5e-34 | 588 | 690 | 6 | 108 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 5e-34 | 588 | 690 | 6 | 108 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007049856.2 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3 isoform X4 | ||||
Swissprot | Q01593 | 1e-173 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A061DMT1 | 0.0 | A0A061DMT1_THECC; ABI3, putative isoform 5 | ||||
STRING | EOX94011 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-161 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG003056t5 |
Entrez Gene | 18612837 |