PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG003056t3 | ||||||||
Common Name | TCM_003056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 734aa MW: 82632.4 Da PI: 6.7088 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.1 | 1.8e-19 | 594 | 689 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W++++++ ++ks++y+l+ ++ +Fv+ ngL+egDf+v++ ++ + Thecc1EG003056t3 594 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRTNGLQEGDFIVIY--SDvK 683 599************************999999********7778*******99777777777777.*******************9..4446 PP EE..EE CS B3 89 efelvv 94 + ++++ Thecc1EG003056t3 684 CSKYLI 689 666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 8.4E-18 | 593 | 695 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.348 | 593 | 695 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-22 | 594 | 687 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-26 | 594 | 701 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-15 | 594 | 687 | IPR003340 | B3 DNA binding domain |
CDD | cd10015 | 5.46E-36 | 594 | 692 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 734 aa Download sequence Send to blast |
MWVSWSLDHH KQHLRCEDLQ AGARNEANPS GFDAPEVERV MGTEEREIWL DRQQDDLLDV 60 NDASIFYGDF PPLPDFPCMS SSSSSSSTPA LVKAFACSSS ASTASSCSSA ASWAVLKSDA 120 DEDVERKNNC HGHHHHHHHH HHHHHHNHHH HHGQHDLVDG TPAALSSTVS MEILQPSDHV 180 MHGVDCMDVM ENFGYMDLLD NNDFFDPSSI FQHDDTGLEE FQQEQKPQQE QSQQPEQEVP 240 TIYSKNEETQ EEKSSDDLAM VFLEWLKTNK ETVSAEDLRR VKIKKATIEC AARRLGGGKE 300 AMKQLLKLIL EWVQTNHLQK RRIKESASNN NIDIPYQYQD NFQNPNPNPN PNSNPNLSCD 360 SGPPPEPNSC FSQPPWIPQP TYVTDPVAVV AGFAPTVGYM GDPFLNGAPN INSHPYQPPT 420 DYPMLDSAQT WPPSQFALAS QYNSFPDNNL HPAPHQPSAF PGYGNQYPYQ YIQRHNNEER 480 LVRLGSSATK EARKKRMARQ RRFAPHHRNH NYHNNQQSQH QNQSVDQHVR LIKDNCAAAA 540 QANSGNWVYW PAVACGMASN PPLLPGDVPV VHPVDRPSMQ GQTYQRHVAS DRRQKVLKQS 600 DVGNLGRIVL PKKEAETHLP ELEARDGISI AMEDIGTSRV WNMRYRFWPN NKSRMYLLEN 660 TGDFVRTNGL QEGDFIVIYS DVKCSKYLIR GVKVRQSGPK SETKRPGKSQ KNQHSNSPAA 720 AAVNGSSSSP IKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 6e-34 | 594 | 696 | 6 | 108 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 6e-34 | 594 | 696 | 6 | 108 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007049856.2 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3 isoform X4 | ||||
Swissprot | Q01593 | 1e-173 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A061DVG8 | 0.0 | A0A061DVG8_THECC; ABI3, putative isoform 3 | ||||
STRING | EOX94011 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-161 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG003056t3 |
Entrez Gene | 18612837 |