PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG003056t1 | ||||||||
Common Name | TCM_003056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 747aa MW: 84243.4 Da PI: 6.7954 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.8 | 1.2e-19 | 607 | 702 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W++++++ ++ks++y+l+ ++ +Fv+ ngL+egDf+v++ ++ + Thecc1EG003056t1 607 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRTNGLQEGDFIVIY--SDvK 696 79*************************999999********7778*******99777777777777.*******************9..4446 PP EE..EE CS B3 89 efelvv 94 + ++++ Thecc1EG003056t1 697 CSKYLI 702 666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.7E-28 | 601 | 714 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.62E-37 | 604 | 705 | No hit | No description |
SuperFamily | SSF101936 | 1.41E-22 | 605 | 700 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.546 | 606 | 708 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.2E-19 | 606 | 708 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-16 | 607 | 700 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 747 aa Download sequence Send to blast |
MWVSWSLDHH KQHLRCEDLQ AGARNEANPS GFDAPEVERV MGTEEREIWL DRQQDDLLDV 60 NDASIFYGDF PPLPDFPCMS SSSSSSSTPA LVKAFACSSS ASTASSCSSA ASWAVLKSDA 120 DEDVERKNNC HGHHHHHHHH HHHHHHNHHH HHGQHDLVDG TPAALSSTVS MEILQPSDHV 180 MHGVDCMDVM ENFGYMDLLD NNDFFDPSSI FQHDDTGLEE FQQEQKPQQE QSQQPEQEVP 240 TIYSKNEETQ EEKSSDDLAM VFLEWLKTNK ETVSAEDLRR VKIKKATIEC AARRLGGGKE 300 AMKQLLKLIL EWVQTNHLQK RRIKESASNN NIDIPYQYQD NFQNPNPNPN PNSNPNLSCD 360 SGPPPEPNSC FSQPPWIPQP TYVTDPVAVV AGFAPTVGYM GDPFLNGAPN INSHPYQPPT 420 DYPMLDSAQT WPPSQFALAS QYNSFPDNNL HPAPHQPSAF PGYGNQYPYQ YIQRHNNEER 480 LVRLGSSATK EARKKRMARQ RRFAPHHRNH NYHNNQQSQH QNQSVDQHVR LIKDNCAAAA 540 QANSGNWVYW PAVACGMASN PPLLPGDVPV VHPVDRPSMQ GQTYQRHVAS DRRQGWKPEK 600 NLRFLLQKVL KQSDVGNLGR IVLPKKEAET HLPELEARDG ISIAMEDIGT SRVWNMRYRF 660 WPNNKSRMYL LENTGDFVRT NGLQEGDFIV IYSDVKCSKY LIRGVKVRQS GPKSETKRPG 720 KSQKNQHSNS PAAAAVNGSS SSPIKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-36 | 602 | 706 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-36 | 602 | 706 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007049854.2 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3 isoform X2 | ||||
Swissprot | Q01593 | 0.0 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A061DPJ3 | 0.0 | A0A061DPJ3_THECC; ABI3, putative isoform 1 | ||||
STRING | EOX94011 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10280 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-175 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG003056t1 |
Entrez Gene | 18612837 |