PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG002925t1

Common Name

TCM_002925

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 275aa MW: 31665.7 Da PI: 7.5025

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG002925t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.2	1.3e-19	21	107	2	87
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 Wt qe+l Li+a++e++ +l+rg+lk+ +Weev+ + + +++ qC++k+e+l++ry+ +++g + s +py++ +ea Thecc1EG002925t1 21 WTPQETLNLIQAYQEKWYSLKRGQLKASQWEEVAVTVaarcglFDDSAAKTALQCRHKMEKLRRRYRSERQGVASA-----SLWPYYEAMEA 107 ***********************************998888888999********************984.....68*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-18	20	108	No hit	No description
SMART	SM00595	5.3E-7	28	113	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MSYPSPAADP QPAKKPQPLP WTPQETLNLI QAYQEKWYSL KRGQLKASQW EEVAVTVAAR 60 CGLFDDSAAK TALQCRHKME KLRRRYRSER QGVASASLWP YYEAMEALEH GPLPISARPL 120 TSLVPNRGKN FYSENGHKVG NIYDNNDDVV EEDEEDDEEE NQFSKSRSIN YILRRPSVVN 180 RFSGFLSGAR KRVRPEEGGD EDVAVGEENR GAELAVEIKR FAERFMRVER KRMEMMQETE 240 RLRVEMENRR IEMILDSQRK IVDVIASTLG RSRQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007049769.2	0.0	PREDICTED: trihelix transcription factor ASIL1
TrEMBL	A0A061DPA7	0.0	A0A061DPA7_THECC; Alcohol dehydrogenase transcription factor Myb/SANT-like family protein, putative
STRING	EOX93926	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10281	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	8e-57	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG002925t1
Entrez Gene	18612778

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]