PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG002839t1
Common NameTCM_002839
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 420aa    MW: 47296.1 Da    PI: 5.2242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG002839t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.77.9e-3951343128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       +GfrF+Ptdeel+ eyL+ k+ +++  + +vi+ev di+++ePw+Lp+  +++++++ wyf  + + ky+++kr +r+t +gyWk tg+ +++
  Thecc1EG002839t1   5 KGFRFRPTDEELI-EYLQDKTFDRDSLV-QVIAEVhDICELEPWELPErsAFQTGDRLWYFMYQPKYKYRNSKRISRTTLEGYWKPTGNARKI 95 
                       7************.********999766.8999999**********94357888999***********************************9 PP

               NAM  93 lsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                       +++ +ge++g kktLvfykg  ++++ ++t Wvmhey+l
  Thecc1EG002839t1  96 INHhTGEEIGSKKTLVFYKGqcNDKNKNRTCWVMHEYEL 134
                       99878899**********88556778889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.7963155IPR003441NAC domain
SuperFamilySSF1019414.58E-383155IPR003441NAC domain
PfamPF023652.1E-205134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNIVKGFRFR PTDEELIEYL QDKTFDRDSL VQVIAEVHDI CELEPWELPE RSAFQTGDRL  60
WYFMYQPKYK YRNSKRISRT TLEGYWKPTG NARKIINHHT GEEIGSKKTL VFYKGQCNDK  120
NKNRTCWVMH EYELTAAKPT HSDHKTFNLC KLKKKGDISS STSEVGQSSQ HSLSNLEHVA  180
SNAMSEDLLD LKGSSAPEAS NGSVGIRTQS SSVETYAGER SHQNNIINED KGSNLSSNSI  240
NHVAEEVIPQ GQLHLKALST EPNGPHDNNK VQNLYSTTKQ DDESCNSVLT NNDETDPIET  300
SNQHNAAVTV ESFEVPFNLD YLAHEDLIPT DLLYNALQEL LEEPEATNNS NWIQNQHITD  360
IGEDGELSNS GFADNNEVSL QEGSRHQSLA AENKGFRLPC IGVMESPIAM EKSRKRPRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-25115515165NO APICAL MERISTEM PROTEIN
1ut4_B2e-25115515165NO APICAL MERISTEM PROTEIN
1ut7_A2e-25115515165NO APICAL MERISTEM PROTEIN
1ut7_B2e-25115515165NO APICAL MERISTEM PROTEIN
4dul_A2e-25115515165NAC domain-containing protein 19
4dul_B2e-25115515165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007049703.20.0PREDICTED: NAC domain-containing protein 68 isoform X1
TrEMBLA0A061DMC90.0A0A061DMC9_THECC; Nam protein 1, putative
STRINGEOX938600.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2220645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.28e-35TCV-interacting protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]