PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG002087t1

Common Name

TCM_002087

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 633aa MW: 68025.2 Da PI: 5.9606

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG002087t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.3e-30	359	417	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Thecc1EG002087t1 359 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 417 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-33	343	419	IPR003657	WRKY domain
SuperFamily	SSF118290	1.23E-27	351	419	IPR003657	WRKY domain
PROSITE profile	PS50811	29.792	353	419	IPR003657	WRKY domain
SMART	SM00774	1.0E-36	358	418	IPR003657	WRKY domain
Pfam	PF03106	1.2E-26	360	417	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence Send to blast
MAEGSGLSID LDPNSFFLHK PTVLNSFPDD TKDNNIINNK NSKRSSKVFS PTTPLMDATT 60 ASRSSPPTIQ FPVNLNCSLD QHPSLPSDDH KRTVIGEMDF FAQKNNKRVD SDEDGDANPI 120 HTSDADVKDS TERTALELNV NTGLNLLTTN TTSDQSTVDD GISSNLEDKR AKNELAVLQA 180 ELERMMAENQ RLRDTLSQVT SNYNAVQMHL VTLMQQQHDG KAEKAEEQDP MMEEKSEQKK 240 PNGGVIVPRQ FMDLGLAAAA AADADEPSLS SSEGRSHDRS GSPNNNTEVA SKEFGLRKSG 300 NSEEGRGTGR EDSPDQGSQG WGANKVPRFN SSKNVDQTEA TMRKARVSVR ARSEAPMITD 360 GCQWRKYGQK MAKGNPCPRA YYRCTMAAGC PVRKQVQRCA EDRTILITTY EGNHNHPLPP 420 AAMAMASTTS SAARMLLSGS MSSADGLMNS NFLTRTLLPC SSSMATISAS APFPTVTLDL 480 TQTPNPLQFP RPPGQFQVPF PNPPHNLANS PAALLPQIFG QALYNQSKFS GLQMSQDMEQ 540 PQSVHQLPQG QQNSLADTVS AATAAIAADP NFTAALAVAI TSIIGSSHPN NVPNNNATNF 600 TSATNSSGNV TTTSNSNSNA NNKISNSSFA AN*

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence Send to blast

MAEGSGLSID LDPNSFFLHK PTVLNSFPDD TKDNNIINNK NSKRSSKVFS PTTPLMDATT  60
ASRSSPPTIQ FPVNLNCSLD QHPSLPSDDH KRTVIGEMDF FAQKNNKRVD SDEDGDANPI  120
HTSDADVKDS TERTALELNV NTGLNLLTTN TTSDQSTVDD GISSNLEDKR AKNELAVLQA  180
ELERMMAENQ RLRDTLSQVT SNYNAVQMHL VTLMQQQHDG KAEKAEEQDP MMEEKSEQKK  240
PNGGVIVPRQ FMDLGLAAAA AADADEPSLS SSEGRSHDRS GSPNNNTEVA SKEFGLRKSG  300
NSEEGRGTGR EDSPDQGSQG WGANKVPRFN SSKNVDQTEA TMRKARVSVR ARSEAPMITD  360
GCQWRKYGQK MAKGNPCPRA YYRCTMAAGC PVRKQVQRCA EDRTILITTY EGNHNHPLPP  420
AAMAMASTTS SAARMLLSGS MSSADGLMNS NFLTRTLLPC SSSMATISAS APFPTVTLDL  480
TQTPNPLQFP RPPGQFQVPF PNPPHNLANS PAALLPQIFG QALYNQSKFS GLQMSQDMEQ  540
PQSVHQLPQG QQNSLADTVS AATAAIAADP NFTAALAVAI TSIIGSSHPN NVPNNNATNF  600
TSATNSSGNV TTTSNSNSNA NNKISNSSFA AN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	345	421	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017969767.1	0.0	PREDICTED: probable WRKY transcription factor 31
Swissprot	Q9XEC3	1e-148	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	A0A061DTF6	0.0	A0A061DTF6_THECC; WRKY family transcription factor
STRING	EOX93243	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1057	28	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22070.1	1e-120	WRKY DNA-binding protein 31

Link Out ? help Back to Top
Phytozome	Thecc1EG002087t1
Entrez Gene	18612297

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]