PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG002031t8
Common NameTCM_002031
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family FAR1
Protein Properties Length: 762aa    MW: 88447.9 Da    PI: 6.442
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG002031t8genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.93.9e-2498184191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +fY+eYA++vGF +++ +s++skr+g++++ +  Cs+ g+++e+++      ++r+  +tgCka++++k+++d+kw ++++++eHnHe++p
  Thecc1EG002031t8  98 SFYREYARSVGFGITIISSRRSKRSGKFIDVKVACSRFGSKRESSTI----LNPRSCPKTGCKARMHMKRRQDEKWIIHSFVKEHNHEICP 184
                       5***************************************9998766....99***********************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2198184IPR004330FAR1 DNA binding domain
PfamPF105511.2E-24266359IPR018289MULE transposase domain
PfamPF044343.8E-7546580IPR007527Zinc finger, SWIM-type
PROSITE profilePS509668.976546582IPR007527Zinc finger, SWIM-type
SMARTSM005754.3E-6557584IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MEIDLEVPSK EQEKLIPGSN ETDDVRDAED EIDVEDNDEN PPTTSEHAEE ACEPNLIESF  60
TGCEDQVDVT TVEADVCEGT ILEPQNGLEF ESKEAAYSFY REYARSVGFG ITIISSRRSK  120
RSGKFIDVKV ACSRFGSKRE SSTILNPRSC PKTGCKARMH MKRRQDEKWI IHSFVKEHNH  180
EICPDDFYYA IRGRNKQSGA VACQKKGLQL ALDEKDVELM LDHFMCMQDE NPDFFYAIDL  240
DNEKSARSVF WVDAKGRHSY SHFGDVVFFD TFFIRNKYKI PYIPIIGVNH HFQYMLLGCA  300
LIGDHAMSAF VWLMRSWLKA MGGQAPKVII TDQEKVLNEA VVDVFSDSRH CFCLWHVLSK  360
FSENLGCIMN QNESFMTKFN KCIYRSWTHE QFEKRWCRMV DKFELKEHEW VLSLYNDRKK  420
WVPTYMRDTF LAGISTTERS KSFASFFDKF MHKEATFNEF IEQLKSFSLE LYEVEAKADF  480
ETQNKQPELR SLSAFEKQMS MIYTDTIFKK FQVEILGVVS CHLQKESEDE DTVVFRVDDF  540
EERQNFFVAW NKREFDICCL CRSFEYRGFL CKHAILVLQM SGVSDIPSRY ILKRWTKEAK  600
IRENLGEISN RLHFRVQRFN DLCKRAIKLG VQGCLSEEAY TIALQALEEA LKHCVGVNNS  660
AKSVFEPNIL SVHGFLEIEA ENRWNTTAKS SKKKKMYKRR KVRTGPWTPL IFTALHQSIS  720
MISTYPNSCN RSISVHLCDE VDINNCLHII ILVGLNNIFI P*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007049036.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X2
SwissprotQ3EBQ30.0FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBLA0A061DKE10.0A0A061DKE1_THECC; FRS transcription factor family, putative isoform 8
STRINGEOX931950.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.40.0FAR1-related sequence 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]