PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G32250.4 | ||||||||
Common Name | FRS2, T32F6.23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | FAR1 | ||||||||
Protein Properties | Length: 805aa MW: 91692.7 Da PI: 6.5447 | ||||||||
Description | FAR1-related sequence 2 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 76.7 | 4.7e-24 | 53 | 138 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA++vGF +++++s++skr+g++++ + Cs+ g+++e+ ++ ++r+ +tgCka l++k+++d+kw+++++++eHnHe++p AT2G32250.4 53 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKREKATA----INPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEICP 138 9***************************************998877....99***********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-21 | 53 | 138 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-22 | 219 | 311 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 6.4E-8 | 499 | 534 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.274 | 499 | 535 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.3E-7 | 510 | 537 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 805 aa Download sequence Send to blast |
MDDEDVEIDL LTKSSNVDVF CEASTSGNVA QCATVSELRN GMDFESKEAA YYFYREYARS 60 VGFGITIKAS RRSKRSGKFI DVKIACSRFG TKREKATAIN PRSCPKTGCK AGLHMKRKED 120 EKWVIYNFVK EHNHEICPDD FYVSVRGKNK PAGALAIKKG LQLALEEEDL KLLLEHFMEM 180 QDKQPGFFYA VDFDSDKRVR NVFWLDAKAK HDYCSFSDVV LFDTFYVRNG YRIPFAPFIG 240 VSHHRQYVLL GCALIGEVSE STYSWLFRTW LKAVGGQAPG VMITDQDKLL SDIVVEVFPD 300 VRHIFCLWSV LSKISEMLNP FVSQDDGFME SFGNCVASSW TDEHFERRWS NMIGKFELNE 360 NEWVQLLFRD RKKWVPHYFH GICLAGLSGP ERSGSIASHF DKYMNSEATF KDFFELYMKF 420 LQYRCDVEAK DDLEYQSKQP TLRSSLAFEK QLSLIYTDAA FKKFQAEVPG VVSCQLQKER 480 EDGTTAIFRI EDFEERQNFF VALNNELLDA CCSCHLFEYQ GFLCKHAILV LQSADVSRVP 540 SQYILKRWSK KGNNKEDKND KCATIDNRMA RFDDLCRRFV KLGVVASLSD EACKTALKLL 600 EETVKHCVSM DNSSKFPSEP DKLMTGGSIG LENEGVLDCA SKVSKKKKIQ KKRKVYCGPE 660 DATNRSEELR QETEQVSSRA PTFENCYIPQ ANMEEPELGS RATTLGVYYS TQQTNQGFPS 720 ISSIQNGYYG HPPTIQAMGN LHSIHERMSQ YETQPSMQGA GQTGFRGSAI RGCYDIEETL 780 HDMTMGSSQF QGSDSSHPSD HRLSN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.13189 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 266360_at | 0.0 | ||||
Expression Atlas | AT2G32250 | - | ||||
AtGenExpress | AT2G32250 | - | ||||
ATTED-II | AT2G32250 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G32250.4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G32250 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228730 | 0.0 | AK228730.1 Arabidopsis thaliana mRNA for Mutator-like transposase, complete cds, clone: RAFL16-06-P03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001118431.1 | 0.0 | FAR1-related sequence 2 | ||||
Refseq | NP_973580.1 | 0.0 | FAR1-related sequence 2 | ||||
Swissprot | Q3EBQ3 | 0.0 | FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2 | ||||
TrEMBL | A0A178W0T0 | 0.0 | A0A178W0T0_ARATH; FRS2 | ||||
STRING | AT2G32250.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT2G32250.4 |
Entrez Gene | 817785 |
iHOP | AT2G32250 |
wikigenes | AT2G32250 |
Publications ? help Back to Top | |||
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