PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG002031t4

Common Name

TCM_002031

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 873aa MW: 100807 Da PI: 5.7927

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG002031t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.7	4.7e-24	98	184	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA++vGF +++ +s++skr+g++++ + Cs+ g+++e+++ ++r+ +tgCka++++k+++d+kw ++++++eHnHe++p Thecc1EG002031t4 98 SFYREYARSVGFGITIISSRRSKRSGKFIDVKVACSRFGSKRESSTI----LNPRSCPKTGCKARMHMKRRQDEKWIIHSFVKEHNHEICP 184 5*************************************9998766....99*********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-21	98	184	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-24	266	359	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.976	546	582	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.5E-7	546	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.3E-6	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence Send to blast
MEIDLEVPSK EQEKLIPGSN ETDDVRDAED EIDVEDNDEN PPTTSEHAEE ACEPNLIESF 60 TGCEDQVDVT TVEADVCEGT ILEPQNGLEF ESKEAAYSFY REYARSVGFG ITIISSRRSK 120 RSGKFIDVKV ACSRFGSKRE SSTILNPRSC PKTGCKARMH MKRRQDEKWI IHSFVKEHNH 180 EICPDDFYYA IRGRNKQSGA VACQKKGLQL ALDEKDVELM LDHFMCMQDE NPDFFYAIDL 240 DNEKSARSVF WVDAKGRHSY SHFGDVVFFD TFFIRNKYKI PYIPIIGVNH HFQYMLLGCA 300 LIGDHAMSAF VWLMRSWLKA MGGQAPKVII TDQEKVLNEA VVDVFSDSRH CFCLWHVLSK 360 FSENLGCIMN QNESFMTKFN KCIYRSWTHE QFEKRWCRMV DKFELKEHEW VLSLYNDRKK 420 WVPTYMRDTF LAGISTTERS KSFASFFDKF MHKEATFNEF IEQLKSFSLE LYEVEAKADF 480 ETQNKQPELR SLSAFEKQMS MIYTDTIFKK FQVEILGVVS CHLQKESEDE DTVVFRVDDF 540 EERQNFFVAW NKREFDICCL CRSFEYRGFL CKHAILVLQM SGVSDIPSRY ILKRWTKEAK 600 IRENLGEISN RLHFRVQRFN DLCKRAIKLG VQGCLSEEAY TIALQALEEA LKHCVGVNNS 660 AKSVFEPNIL SVHGFLEIEA ENRWNTTAKS SKKKKMYKRR KVHSELEEVA TGQDNCQQMI 720 SSRAHTLDGC YVPQQDMQGM DVGSRAPTLD GYYSSQQNIQ RMGQLNSMSP FRDGYYSNQQ 780 SMLGLGQLHS LPARVNQYGN QQGMQGLVLD LLMITASLFL VVFVGNNFIY DLEVISLGIL 840 LQGQLGFRAP AMQGFDIADS LQDEDRSMDS THF

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence Send to blast

MEIDLEVPSK EQEKLIPGSN ETDDVRDAED EIDVEDNDEN PPTTSEHAEE ACEPNLIESF  60
TGCEDQVDVT TVEADVCEGT ILEPQNGLEF ESKEAAYSFY REYARSVGFG ITIISSRRSK  120
RSGKFIDVKV ACSRFGSKRE SSTILNPRSC PKTGCKARMH MKRRQDEKWI IHSFVKEHNH  180
EICPDDFYYA IRGRNKQSGA VACQKKGLQL ALDEKDVELM LDHFMCMQDE NPDFFYAIDL  240
DNEKSARSVF WVDAKGRHSY SHFGDVVFFD TFFIRNKYKI PYIPIIGVNH HFQYMLLGCA  300
LIGDHAMSAF VWLMRSWLKA MGGQAPKVII TDQEKVLNEA VVDVFSDSRH CFCLWHVLSK  360
FSENLGCIMN QNESFMTKFN KCIYRSWTHE QFEKRWCRMV DKFELKEHEW VLSLYNDRKK  420
WVPTYMRDTF LAGISTTERS KSFASFFDKF MHKEATFNEF IEQLKSFSLE LYEVEAKADF  480
ETQNKQPELR SLSAFEKQMS MIYTDTIFKK FQVEILGVVS CHLQKESEDE DTVVFRVDDF  540
EERQNFFVAW NKREFDICCL CRSFEYRGFL CKHAILVLQM SGVSDIPSRY ILKRWTKEAK  600
IRENLGEISN RLHFRVQRFN DLCKRAIKLG VQGCLSEEAY TIALQALEEA LKHCVGVNNS  660
AKSVFEPNIL SVHGFLEIEA ENRWNTTAKS SKKKKMYKRR KVHSELEEVA TGQDNCQQMI  720
SSRAHTLDGC YVPQQDMQGM DVGSRAPTLD GYYSSQQNIQ RMGQLNSMSP FRDGYYSNQQ  780
SMLGLGQLHS LPARVNQYGN QQGMQGLVLD LLMITASLFL VVFVGNNFIY DLEVISLGIL  840
LQGQLGFRAP AMQGFDIADS LQDEDRSMDS THF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007049036.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X2
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A061DKM2	0.0	A0A061DKM2_THECC; FRS transcription factor family, putative isoform 4 (Fragment)
STRING	EOX93195	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Thecc1EG002031t4
Entrez Gene	18612265

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]