PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG001942t1

Common Name

TCM_001942

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 99aa MW: 11384.4 Da PI: 11.641

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001942t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.9	4.7e-28	21	71	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 prlrWtpeLH++Fv+av+ LGG+ kAtPk+il++m+vkgL ++h+kSHLQ+ Thecc1EG001942t1 21 PRLRWTPELHHQFVQAVDCLGGKYKATPKRILQMMSVKGLRISHIKSHLQR 71 8*************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.354	17	77	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-25	18	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-20	21	71	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.55E-14	21	72	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-7	22	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MTKNSRRPGT GVRSYNKSDL PRLRWTPELH HQFVQAVDCL GGKYKATPKR ILQMMSVKGL 60 RISHIKSHLQ RQEPFLSPFL SIFHFPKLYI RQGPSQLA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-18	21	71	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-18	21	71	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-18	21	71	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-18	21	71	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-18	21	71	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-18	21	71	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-18	21	71	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-18	21	71	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-18	21	71	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-18	21	71	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-18	21	71	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-18	21	71	3	53	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017975164.1	1e-53	PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
Swissprot	Q700D9	2e-23	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A061DSZ1	1e-66	A0A061DSZ1_THECC; Homeodomain-like superfamily protein isoform 1
STRING	EOX93099	1e-45	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	7e-26	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG001942t1
Entrez Gene	18612212

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]