PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG001432t2

Common Name

TCM_001432

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C3H

Protein Properties

Length: 968aa MW: 107284 Da PI: 8.7537

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG001432t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.9	8.6e-09	184	205	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t +C+ f++ G C++G++C+F H Thecc1EG001432t2 184 TQICKEFMA-GRCRRGSQCQFLH 205 789****.*********** PP
2	zf-CCCH	21.7	3.6e-07	247	266	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++++ G C++G++C+FaH+ Thecc1EG001432t2 247 CNDYLK-GNCRRGASCRFAHD 266 ****.***********5 PP
3	zf-CCCH	18	5.3e-06	308	328	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+++a+ G C+ G C+F+H Thecc1EG001432t2 308 VPCKYYAA-GNCRNGKYCRFSH 328 599999.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.652	181	208	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-5	181	207	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-5	183	206	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.9E-7	184	206	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.0E-6	184	205	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	241	268	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.1E-4	241	267	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.5E-6	244	266	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.8E-5	247	266	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.648	304	331	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0022	304	330	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-5	305	329	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence Send to blast
MSGSRKRCSK WDSKEERQYS LENVRDAAWP AKAGVSFHDR ESEHGYFSPE VGRNGNKWSF 60 MEASDMMKSK HGLPSRESLT GGRGARKDDN INVDCVKNWK TTSPWDGDET YSMRMSPGLD 120 DWRQQNRRHS PKSDWSRSQS FTHKSRSRSW SRSRSRSRSR SPVRGIRRQS GFHERTRSRS 180 GVSTQICKEF MAGRCRRGSQ CQFLHQDIQS HEDGWDNRQK KAGGSKYFTP NDGKEYLIKS 240 GRSTDCCNDY LKGNCRRGAS CRFAHDGASD GFSRGSINEV SRERESNKRN RVATPERDGE 300 REARRSDVPC KYYAAGNCRN GKYCRFSHHG QARASPERSR GDRGGWGQSL VSVDKLRDGA 360 KFRDADASYN VEKSRNGPKW SDADASNEAE KSWAGPKWSD ADASNDVDKS WTGSKWGDTG 420 TYSGAANMSK DINGKVGASE SRFPDWSMDE RWQHNYDVSG KSSETKVHYE TVDIDKDEAI 480 PRKIENAGLS TGVSEPRGAE ESLGDMEMSP EWNYRIPSSV KKETSHSSKS QAPIDTSLPA 540 HEKDIAEEAS GRVCDGLAAS QPISIQKSNF QHDHVMRGSS AVALPSDSNA ASRNSAISHI 600 DLNFSSNILQ MKSFDQPGPS SSSLPYSNLK VVGQSQVAIP SDSNEVNVKV TQNNLLFQEE 660 KPSNKMNFGD TNTSNGNSGT QSTQNMVSNE QLTQLTNLSA SLAQLFGKGQ QLPLLHVALN 720 AHDAMQVNSF ASSGGPIEPD SMPTVQPGQD VTFLKQYDPI SDSIEPVKKQ DTNTKPLGFS 780 IHPVAQKNTA DGKPELSANM LLPSSLVGST NGGDYHNDHS CKREPDSDSH MPNRVEPVAS 840 SEVTKENEGV EETKKAQEEN KNGPSENVDA DDRTDEGKKS KDGKGIRAFK FALVEFVKDL 900 LKPTWKEGQI GKDAYKNIVK KVVDKVTATM QGANIPQTPE KIDQYLSFSK PKLSKLVQAY 960 VEKFQKN*

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence Send to blast

MSGSRKRCSK WDSKEERQYS LENVRDAAWP AKAGVSFHDR ESEHGYFSPE VGRNGNKWSF  60
MEASDMMKSK HGLPSRESLT GGRGARKDDN INVDCVKNWK TTSPWDGDET YSMRMSPGLD  120
DWRQQNRRHS PKSDWSRSQS FTHKSRSRSW SRSRSRSRSR SPVRGIRRQS GFHERTRSRS  180
GVSTQICKEF MAGRCRRGSQ CQFLHQDIQS HEDGWDNRQK KAGGSKYFTP NDGKEYLIKS  240
GRSTDCCNDY LKGNCRRGAS CRFAHDGASD GFSRGSINEV SRERESNKRN RVATPERDGE  300
REARRSDVPC KYYAAGNCRN GKYCRFSHHG QARASPERSR GDRGGWGQSL VSVDKLRDGA  360
KFRDADASYN VEKSRNGPKW SDADASNEAE KSWAGPKWSD ADASNDVDKS WTGSKWGDTG  420
TYSGAANMSK DINGKVGASE SRFPDWSMDE RWQHNYDVSG KSSETKVHYE TVDIDKDEAI  480
PRKIENAGLS TGVSEPRGAE ESLGDMEMSP EWNYRIPSSV KKETSHSSKS QAPIDTSLPA  540
HEKDIAEEAS GRVCDGLAAS QPISIQKSNF QHDHVMRGSS AVALPSDSNA ASRNSAISHI  600
DLNFSSNILQ MKSFDQPGPS SSSLPYSNLK VVGQSQVAIP SDSNEVNVKV TQNNLLFQEE  660
KPSNKMNFGD TNTSNGNSGT QSTQNMVSNE QLTQLTNLSA SLAQLFGKGQ QLPLLHVALN  720
AHDAMQVNSF ASSGGPIEPD SMPTVQPGQD VTFLKQYDPI SDSIEPVKKQ DTNTKPLGFS  780
IHPVAQKNTA DGKPELSANM LLPSSLVGST NGGDYHNDHS CKREPDSDSH MPNRVEPVAS  840
SEVTKENEGV EETKKAQEEN KNGPSENVDA DDRTDEGKKS KDGKGIRAFK FALVEFVKDL  900
LKPTWKEGQI GKDAYKNIVK KVVDKVTATM QGANIPQTPE KIDQYLSFSK PKLSKLVQAY  960
VEKFQKN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	159	RSRSRSRSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF313496	0.0	KF313496.1 Firmiana danxiaensis microsatellite a44026_SSR39 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007048331.2	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBL	A0A061DRA2	0.0	A0A061DRA2_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 2
STRING	EOX92488	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15764	9	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	8e-19	C3H family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG001432t2
Entrez Gene	18611820

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]