PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001301t1
Common NameTCM_001301
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 387aa    MW: 41468.6 Da    PI: 6.7206
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001301t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20180229255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp    ++ +r++lg+f+tae Aa+a+++a+++++g
  Thecc1EG001301t1 180 RYRGVRQRP-WGKWAAEIRDP----IKaARVWLGTFDTAEAAARAYDEAALRFRG 229
                       7********.**********7....357*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-14180229IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22180238IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-33180238IPR001471AP2/ERF domain
PROSITE profilePS5103225.739180237IPR001471AP2/ERF domain
SMARTSM003801.4E-38180243IPR001471AP2/ERF domain
PRINTSPR003679.9E-12181192IPR001471AP2/ERF domain
CDDcd000182.40E-15188239No hitNo description
PRINTSPR003679.9E-12203219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MCEIKKVANK KGKVETSGGS VVDQDNQWLL VYQPHMMREE GSSSMLSEDR REREMSAMVS  60
ALTHVVAGDV PDDQELAGDG NSDGFDSSIA NYINTTSSWG FGGQKRGREG EGGGGGGGGG  120
GAMAVESVSK LCSQFGNFPH GGRGSSSVGV RVTDSNTPAQ LVPTYEYRSN DNCREEPRRR  180
YRGVRQRPWG KWAAEIRDPI KAARVWLGTF DTAEAAARAY DEAALRFRGN KAKLNFPENV  240
KLKSPPSSPA TTQFITSDSA TTLMSIPTST EPIVHSQSNY LVQSPQVSGG YLDYSQFFLG  300
PSNDFPKQQQ EQPLKLYEQR VLSTSVGSLA QSCSSTSSSS STSYPLAFLS QPSGHHLNLA  360
SSQGGGVGDF SVHAWSDSSH YTSTSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23179240163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048189.20.0PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A061DK110.0A0A061DK11_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOX923460.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91182137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-19ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]