PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG000597t4 | ||||||||
Common Name | TCM_000597 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 489aa MW: 54959.7 Da PI: 8.3161 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.1 | 3.7e-19 | 127 | 217 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f k l++s+v++ ++ lp f++ h ++ +++++++ledesg ++ vk+ +s+++ l++GW++F++ ++L egD+++F+l++ ++f + Thecc1EG000597t4 127 FAKSLVRSHVGSCFWMGLPGMFCKIH-LP-RKDTMIILEDESGHQFHVKY----YSDKTGLSAGWRQFCSVHNLLEGDVLIFQLVEPTKF--K 211 889********************666.44.5788****************....555556***********************9876666..9 PP EEEE-S CS B3 94 vkvfrk 99 v ++r+ Thecc1EG000597t4 212 VYIIRA 217 999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.7E-22 | 119 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.04E-23 | 120 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.72E-26 | 125 | 216 | No hit | No description |
Pfam | PF02362 | 8.9E-17 | 127 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.366 | 127 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.6E-17 | 127 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF05266 | 2.9E-7 | 363 | 474 | IPR007930 | Protein of unknown function DUF724 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MDQRVKKEAE EIHQRTMSFA GRRLKSTGEE DLTLAQLSHT PKLKPSSSGK KKKKKKKDKA 60 LTERKEKQKS QSESRIKHEV SGPGGKHMSS KKNKGAGDGK CTPEIKSPAM IRAEEVQSNL 120 EPEFPSFAKS LVRSHVGSCF WMGLPGMFCK IHLPRKDTMI ILEDESGHQF HVKYYSDKTG 180 LSAGWRQFCS VHNLLEGDVL IFQLVEPTKF KVYIIRANDL TELDGALGLL NLDAHTKQSD 240 AEIGITACKS TKRKRPKSLP LAVVQKKNKR SGLQTNLGQP AEQSENDSEE VGSEVLEGFK 300 LSVPTIQFKD ITSFENFSIL VGDLVIDSEL SEDIRNKYFK LCCSQNSFLH ENIIQGINFK 360 LIVGTISETV NIADAIRACK LTTSQDEFDS WDKTLKAFDL LGMNVGFLRT RLRRLVNLAF 420 ESEGAADARR YVEAKMERAQ TEDEIRNLEA KLAELKDTCK TFGVEIESLQ SQAETYELRF 480 EEEVQASW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 56 | KKKKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582557 | 6e-36 | JX582557.1 Gossypium hirsutum clone NBRI_GE15408 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007047227.2 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100 | ||||
TrEMBL | A0A061DGW8 | 0.0 | A0A061DGW8_THECC; AP2/B3-like transcriptional factor family protein isoform 4 | ||||
STRING | EOX91385 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-34 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG000597t4 |
Entrez Gene | 18611110 |
Publications ? help Back to Top | |||
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