PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000597t3
Common NameTCM_000597
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 383aa    MW: 43182.1 Da    PI: 4.9048
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000597t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.72.5e-1918108199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f k l++s+v++  ++ lp  f++ h ++ +++++++ledesg ++ vk+    +s+++ l++GW++F++ ++L egD+++F+l++ ++f  +
  Thecc1EG000597t3  18 FAKSLVRSHVGSCFWMGLPGMFCKIH-LP-RKDTMIILEDESGHQFHVKY----YSDKTGLSAGWRQFCSVHNLLEGDVLIFQLVEPTKF--K 102
                       889********************666.44.5788****************....555556***********************9876666..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++r+
  Thecc1EG000597t3 103 VYIIRA 108
                       999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-2210109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-2411109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-2616107No hitNo description
PfamPF023625.9E-1718108IPR003340B3 DNA binding domain
SMARTSM010197.6E-1718109IPR003340B3 DNA binding domain
PROSITE profilePS5086313.36618109IPR003340B3 DNA binding domain
PfamPF052661.9E-7257368IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MIRAEEVQSN LEPEFPSFAK SLVRSHVGSC FWMGLPGMFC KIHLPRKDTM IILEDESGHQ  60
FHVKYYSDKT GLSAGWRQFC SVHNLLEGDV LIFQLVEPTK FKVYIIRAND LTELDGALGL  120
LNLDAHTKQS DAEDAEIGIT ACKSTKRKRP KSLPLAVVQK KNKRSGLQTN LGQPAEQSEN  180
DSEEVGSEVL EGFKLSVPTI QFKDITSFEN FSILVGDLVI DSELSEDIRN KYFKLCCSQN  240
SFLHENIIQG INFKLIVGTI SETVNIADAI RACKLTTSQD EFDSWDKTLK AFDLLGMNVG  300
FLRTRLRRLV NLAFESEGAA DARRYVEAKM ERAQTEDEIR NLEAKLAELK DTCKTFGVEI  360
ESLQSQAETY ELRFEEEVQA SW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047227.20.0PREDICTED: B3 domain-containing protein Os01g0234100
TrEMBLA0A061DG860.0A0A061DG86_THECC; AP2/B3-like transcriptional factor family protein isoform 1
TrEMBLA0A061DHU70.0A0A061DHU7_THECC; AP2/B3-like transcriptional factor family protein isoform 3
STRINGEOX913850.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-35B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]