PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DS_EB10DBA07.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 155aa MW: 17611.5 Da PI: 8.1942 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 35.8 | 2.6e-11 | 66 | 152 | 1 | 80 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........tekerrtraetrtgCkaklkvkkekdgkwevtk 80 +fYn Y+ e+GF vr +ks+ + + + +++ vC + + + + r+++ +tr+gC+a++++ +++d+ w++++ Traes_7DS_EB10DBA07.2 66 EFYNLYSWECGFGVRLAKSRLNVER-KRCMQEIVCACAVDPVRLAAFllvvlslqGKPLRENSRSTRCGCNAMIRLLRSNDKGWYIAE 152 6*****************9999554.478899*****999988877799***998888999*************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-8 | 66 | 152 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MLMCSQCIFL GWIAVRVGKA PEEREMNPNM ISALELSVRA YAEKRDGTVV YPSIGTSFDS 60 LDEAYEFYNL YSWECGFGVR LAKSRLNVER KRCMQEIVCA CAVDPVRLAA FLLVVLSLQG 120 KPLRENSRST RCGCNAMIRL LRSNDKGWYI AEHKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155776.1 | 2e-80 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453QWB1 | 3e-82 | A0A453QWB1_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7DS_EB10DBA07.2 | 1e-112 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 5e-10 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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