PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DS_C57224E6E.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 265aa MW: 30602 Da PI: 10.3874

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DS_C57224E6E.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.9	2.4e-15	170	260	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k +t+s+v+ +l lpk+f++++ k ++ +tl de+g + + ++ rk + l++ Wk F+ ++L +gD +vF++++++ Traes_7DS_C57224E6E.1 170 FVKPMTQSHVTGGFWLGLPKQFCTKYLPK--RDEWITLVDEKGTESDSYYLARKWG----LSAQWKAFAINHKLVDGDCLVFERIHQT 251 89**********************433..4568***********444444....9999*****************88766 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v+++r+ Traes_7DS_C57224E6E.1 252 RF--KVHIIRQ 260 66..9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	6.08E-23	163	261	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.9E-20	163	261	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.79E-23	168	259	No hit	No description
Pfam	PF02362	8.8E-14	170	260	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.671	170	261	IPR003340	B3 DNA binding domain
SMART	SM01019	2.5E-16	170	261	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
FIGRRSFPFW PPPPHSHLLP PSAPPQRERE EIREKRWPER SRTRSSAGGR WRRTGASSTS 60 STCTTSPPPS GTPPSPPGPR RSNLRSGSLE XXXXXXXXXX RVASLPEQPN YRFEDTYADI 120 EKKIRWGGSR THSTRTDLID RVYATEEART YATDMAEELQ AKLDPRHPSF VKPMTQSHVT 180 GGFWLGLPKQ FCTKYLPKRD EWITLVDEKG TESDSYYLAR KWGLSAQWKA FAINHKLVDG 240 DCLVFERIHQ TRFKVHIIRQ SSYYK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357200	1e-161	AK357200.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1048A23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185095.1	1e-121	B3 domain-containing protein Os06g0194400-like isoform X1
Swissprot	Q69V36	4e-63	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A3B6TJB3	1e-120	A0A3B6TJB3_WHEAT; Uncharacterized protein
TrEMBL	A0A453QI08	1e-120	A0A453QI08_AEGTS; Uncharacterized protein
STRING	Traes_7DS_C57224E6E.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-50	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]