PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_B671A4EAD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 135aa    MW: 15266.4 Da    PI: 9.6964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_B671A4EAD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-1465110655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Traes_7DS_B671A4EAD.1  65 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 110
                            689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32659109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-1762119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-1163114No hitNo description
Gene3DG3DSA:4.10.280.108.7E-1664125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-1465115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-1165110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MSENMSGMKR PRDSSEPAAQ NGLAHQFSLP KTSSEMAAIE KFLQFQDAVP CKIRAKRGCA  60
THPRSIAERV RRTRISERIR KLQELVPNMD KQTNTADMLD LAVDYIKELQ EQVKVINESR  120
ANCTCSASKH QQYSG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546340.0AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174831.12e-95transcription factor bHLH130-like
SwissprotQ66GR31e-56BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A453RJJ13e-96A0A453RJJ1_AEGTS; Uncharacterized protein
TrEMBLM8BHD61e-96M8BHD6_AEGTA; Transcription factor bHLH130
STRINGEMT213642e-97(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]