PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DS_A234A13E1.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 233aa MW: 26860.8 Da PI: 10.452

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DS_A234A13E1.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.2	2.7e-17	137	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k +t+s+v+ +l lp +f+++h k ++ ltl+de+g + e + k++ l++GW++F+ +++L +gD +vF+l++r+ Traes_7DS_A234A13E1.2 137 FVKPMTQSHVTGGFWLGLPLPFCRKHLPK--RDERLTLKDEQGVESETLYLALKNG----LSAGWRGFAIQHNLVDGDCLVFELINRT 218 89**********************433..4557****9999999677776....9**********************988 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v ++r+ Traes_7DS_A234A13E1.2 219 TF--KVYIIRQ 227 88..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.79E-24	131	228	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.4E-20	132	228	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.98E-26	135	226	No hit	No description
PROSITE profile	PS50863	11.293	137	228	IPR003340	B3 DNA binding domain
SMART	SM01019	3.2E-21	137	228	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.6E-15	137	227	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MAGAIAYEEQ RRRQVEENKR KLEELKLHHL SAAVREAATP KPSPTKSLKR KRVPREAGED 60 TPIRRSGRVA SLPEQPKYRF EDVFHVLEKK IRRGRRTTTS TRSDLINRVY ATDKAREYAT 120 TMAEELQAKL GSGYPSFVKP MTQSHVTGGF WLGLPLPFCR KHLPKRDERL TLKDEQGVES 180 ETLYLALKNG LSAGWRGFAI QHNLVDGDCL VFELINRTTF KVYIIRQSSY YER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160679.1	1e-173	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	1e-104	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A3B6TND6	1e-172	A0A3B6TND6_WHEAT; Uncharacterized protein
TrEMBL	N1R2B2	1e-172	N1R2B2_AEGTA; B3 domain-containing protein
STRING	EMT13106	1e-172	(Aegilops tauschii)
STRING	Traes_7DS_A234A13E1.2	1e-172	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-64	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]