PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_86586E87F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 483aa    MW: 53454.7 Da    PI: 7.4679
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_86586E87F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.87.7e-083003371954
                            HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            Fe   ++yp+  ++  LA++ gL+ +qV++WF N R +
  Traes_7DS_86586E87F.1 300 FEHflHPYPNDVDKHILARQSGLSRSQVSNWFINARVR 337
                            5544589*****************************88 PP
2BELL91.11.1e-29155224372
                   BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            ++l+++ka+Lls+++eVd+ Y++y+e++++   sFeavag g+a++Yt+lA++a+SrhFrcL+da+++qi
  Traes_7DS_86586E87F.1 155 MALERRKARLLSMIKEVDRCYRRYREKMRATELSFEAVAGTGAAQVYTKLAMRAMSRHFRCLRDALVGQI 224
                            6899****************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-4288222IPR006563POX domain
PfamPF075262.7E-3794220IPR006563POX domain
PROSITE profilePS5007111.272278341IPR001356Homeobox domain
SMARTSM003891.0E-7281345IPR001356Homeobox domain
CDDcd000863.49E-11281342No hitNo description
SuperFamilySSF466891.8E-16282348IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-26284347IPR009057Homeodomain-like
PfamPF059202.5E-16298337IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MMASHEPHHH LLGFSSSSPV TPNPAAMAMA FDHHGLFAPL HGDMPPRSGG ADDRPWPPQV  60
STLSLYDTAS QHELQPFTVA PPSMMSMQQQ PFRLNSSRYL GPARELLGEF CSLEGDAMNG  120
GAMMRAPKRD GEVEASSPAC GPWGANPSLS SMNYMALERR KARLLSMIKE VDRCYRRYRE  180
KMRATELSFE AVAGTGAAQV YTKLAMRAMS RHFRCLRDAL VGQIRTLKKS MGESRDAEGM  240
LVAPGASKGD TPRLRVVDQC LRRQRAFQQY GGAAAIESCP WRPQRGLPER AVAVLRSWLF  300
EHFLHPYPND VDKHILARQS GLSRSQVSNW FINARVRLWK PMIEEMYAEE TIQHEDGGTS  360
GGKGELAPTD HHHNNLAAWT TVTTTGDQSC HRLSGRNNPG DCFIPSSLVA DGSQFLHDYP  420
SLCSDSGSGM VSLTLGLQQQ RAFTSPAMIM QQQSPLMIGA EEEDMVLPYR NLMGSELLHD  480
FVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14287345563Homeobox protein Meis2
3k2a_B1e-14287345563Homeobox protein Meis2
4xrm_A8e-15287345563Homeobox protein Meis2
4xrm_B8e-15287345563Homeobox protein Meis2
4xrs_A8e-15287344158Homeobox protein Meis1
4xrs_B8e-15287344158Homeobox protein Meis1
5bng_A7e-15287345159Homeobox protein Meis2
5bng_B7e-15287345159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3607060.0AK360706.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1123N03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149277.10.0homeobox protein BEL1 homolog
RefseqXP_020166134.10.0homeobox protein BEL1 homolog
TrEMBLA0A3B6TI440.0A0A3B6TI44_WHEAT; Uncharacterized protein
STRINGTraes_7DS_86586E87F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-95TALE family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]