PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_68DE33D2A.1
Common NameWM20
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26203.8 Da    PI: 8.9454
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_68DE33D2A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52.1e-29959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           kri+nk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e+s+
  Traes_7DS_68DE33D2A.1  9 KRIDNKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFST 59
                           79***********************************************96 PP
2K-box921e-308817216100
                  K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                            s +qe+ kLk ++e Lq++qR+llGedL++L++keL+qLe+q+e slk+iR++K++  l+q+ +l++ke++lq+ nk+Lrkk++e
  Traes_7DS_68DE33D2A.1  88 SNYQEYLKLKTRVEFLQTTQRNLLGEDLGPLNMKELEQLENQIEISLKHIRATKSQQSLDQLFDLKRKEQQLQDVNKDLRKKIQE 172
                            5689*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.66161IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.92E-41278No hitNo description
SuperFamilySSF554553.27E-32289IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.99986176IPR002487Transcription factor, K-box
PfamPF014868.5E-2689171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0048440Biological Processcarpel development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048443Biological Processstamen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRGKVELKR IDNKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGRLFEFSTS  60
SCMYKTLERY RSCNFNSEAT AAPEIELSNY QEYLKLKTRV EFLQTTQRNL LGEDLGPLNM  120
KELEQLENQI EISLKHIRAT KSQQSLDQLF DLKRKEQQLQ DVNKDLRKKI QETTAQNVLQ  180
MSCQDVGPSG SSGHANQANQ QEHFHPACDP SLRIGYQRNF LDQLNKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-26701701101Developmental protein SEPALLATA 3
4ox0_B5e-26701701101Developmental protein SEPALLATA 3
4ox0_C5e-26701701101Developmental protein SEPALLATA 3
4ox0_D5e-26701701101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5028860.0AM502886.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM20 (WM20 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184037.11e-168MADS-box transcription factor 5-like
SwissprotA2Y9P01e-128MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB81e-128MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLA9J1Z71e-167A9J1Z7_WHEAT; MIKC-type MADS-box transcription factor WM20
STRINGTraes_7DS_68DE33D2A.11e-168(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.22e-79MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paolacci AR,Tanzarella OA,Porceddu E,Varotto S,Ciaffi M
    Molecular and phylogenetic analysis of MADS-box genes of MIKC type and chromosome location of SEP-like genes in wheat (Triticum aestivum L.).
    Mol. Genet. Genomics, 2007. 278(6): p. 689-708
    [PMID:17846794]
  3. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]