PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DS_30D2DA7DA.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 652aa    MW: 73435.6 Da    PI: 9.6174
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DS_30D2DA7DA.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-10477517346
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +WT eE e++ + v++ G++ Wkt a+++g  +++ ++k+ w+ 
  Traes_7DS_30D2DA7DA.2 477 KWTDEEKEQIRRFVEKNGTD-WKTLAQELG--KSEIHVKHAWRR 517
                            8*******************.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.204397470IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-5401472IPR009057Homeodomain-like
SMARTSM007170.034401472IPR001005SANT/Myb domain
SuperFamilySSF466894.91E-9450524IPR009057Homeodomain-like
PROSITE profilePS5129411.773470523IPR017930Myb domain
SMARTSM007175.4E-5474521IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-6477531IPR009057Homeodomain-like
CDDcd001674.00E-4477519No hitNo description
PfamPF139212.7E-8478530No hitNo description
SMARTSM007170.089541612IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-5544626IPR009057Homeodomain-like
PROSITE profilePS500905.401544610IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MDEERVEREG RRLKKKAKHR DEEGKAKDKL KRRTDEKATE ADSVAEKGKQ EAVVGVAEEK  60
EGHKRKKGKG RSEETKSKEN VPVVSGSIEN GVGEEQAKKS GSMALKPCSE GAMNKDNVKK  120
DKKRRKEEKK KEKEADMTEQ KQSFDTTVGK EQAETSGLMA VMPCLERAQG DMSKDKVKKV  180
KKKKKEEKEA EKTGQQKQTF DTTVENSGAE YAEGDKVEGK QSSKAKKSKR KNDDGAPAAD  240
QTVTREYKKK KKEHSVVLEE SSQTENTNEG ENREIKKGGK ERSKASPDFS ENASAGGEEA  300
GVDGNDDKKK KKSKGIGGGK KEKEKAVRST KGKLVSFAGS AEMFRTEGGD GEGIGGGKKK  360
EKTALSKKKG KRVSFADSAE VFSIEGGDNE EDGIRDESKS VHGRFTPEED ATLMEAMRGY  420
AEMKQLGEKG LEMIGSCRKY PELKGCWDDI AKSLPHRPYL AIYRRAHTLL HRSTGCKWTD  480
EEKEQIRRFV EKNGTDWKTL AQELGKSEIH VKHAWRRIKP KKKKGADDEE DASGGESELV  540
HGHRFTTEED AILMEAMRDY AELKQLGEKG LEMIGSCSKY PELKGCWDDI AKSLPHRPHE  600
AIYHRARILL YRSAERKWTD DEKEQIRRYI NSFCRDKIIF VCMTIFTNCF YY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732DKLKRR
2121125KKRRK
3228250KRKNDDGAPAADQTVTREYKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752140.0AK375214.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3088G23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166591.10.0uncharacterized protein LOC109752133
TrEMBLA0A3B6TD080.0A0A3B6TD08_WHEAT; Uncharacterized protein
STRINGTraes_7DS_30D2DA7DA.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-30MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]