PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7DL_C343BA649.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 185aa MW: 20467.9 Da PI: 10.2444

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7DL_C343BA649.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.8	5.5e-14	80	132	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + +r rr+ +NRe+ArrsR+RK a++ Le v++L++e +L k+l e +++ Traes_7DL_C343BA649.2 80 DTRRIRRMVSNRESARRSRRRKHAQLTDLELQVEQLKSESATLFKQLTEANQQ 132 56899***************************************777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-13	78	142	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	80	132	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-11	81	132	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.68E-11	82	134	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.2E-12	82	133	No hit	No description
PROSITE pattern	PS00036	0	85	100	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
QNALELQESN AGHVWWSDGL RAPQHHAVPT PTQSQTPAVS ASPRETISGN QALETESDSD 60 SESLVEIGGG RCKRSGKSSD TRRIRRMVSN RESARRSRRR KHAQLTDLEL QVEQLKSESA 120 TLFKQLTEAN QQFTTAVTDN RILKSDVETL RIKVKMAEDM VARGAVSCGL GQQLGLAPFL 180 NSRKM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:7919992}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361338	0.0	AK361338.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1138D02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167700.1	1e-132	basic leucine zipper 9-like isoform X1
Swissprot	Q6ETX0	3e-61	RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBL	A0A3B6TRJ2	1e-131	A0A3B6TRJ2_WHEAT; Uncharacterized protein
TrEMBL	A0A453T1I0	1e-131	A0A453T1I0_AEGTS; Uncharacterized protein
TrEMBL	M8AMI0	1e-131	M8AMI0_AEGTA; Regulatory protein opaque-2
STRING	Traes_7DL_C343BA649.2	1e-133	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	2e-28	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development. Plant Cell, 1994. 6(9): p. 1277-87 [PMID:7919992]