PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_58DDB90E3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 279aa    MW: 29980.9 Da    PI: 8.8648
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_58DDB90E3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like888.8e-28121175156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++
  Traes_7DL_58DDB90E3.1 121 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGINSLTRHNIASHLQKYRSH 175
                            6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.652118177IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-27119178IPR009057Homeodomain-like
SuperFamilySSF466894.66E-19119178IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-26121175IPR006447Myb domain, plants
PfamPF002493.0E-8124173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
RTATRCRTWR SXXXXXXXXX XXXXXVEEFQ DQQVPCAELL AAVEDVGSVS PASGVIGVDN  60
TAVGLGDEKR GCNQAEVGEN MGGGDRPIVP DAKSPSSTTS SSTEAESRHK SSSKNSHGKK  120
KAKVDWTPEL HRRFVQAVEQ LGIDKAVPSR ILEIMGINSL TRHNIASHLQ KYRSHRKHMI  180
AREAEAASWT QRRQMYAAGG PAXXXXXXXX XXXXXXXXXX XXPSSSSSPS FTGSHAALRS  240
AVARLGSPYD GLAPDADVAE AHNIPRPDAG VGSPAAAAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-16118173257ARR10-B
5lxu_A4e-16121177157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1054060.0EF105406.1 Triticum aestivum golden 2-like protein (Glk1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191527.11e-123probable transcription factor GLK1
SwissprotQ5Z5I43e-59GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLA0A3B6TTK61e-122A0A3B6TTK6_WHEAT; Uncharacterized protein
STRINGTraes_7DL_58DDB90E3.11e-173(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.13e-39GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]