PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_572EF99CA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 380aa    MW: 40708.8 Da    PI: 9.6411
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_572EF99CA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33.1e-1290134347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +W++eE++ ++ + ++lG+g+W+ I+r     Rt+ q+ s+ qky
  Traes_7DL_572EF99CA.1  90 SWSEEEHKNFLLGLNKLGKGDWRGISRNYVVSRTPTQVASHAQKY 134
                            7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.5481833IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.107.5E-41836IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.94282139IPR017930Myb domain
SuperFamilySSF466891.95E-1584140IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1786138IPR006447Myb domain, plants
SMARTSM007172.2E-987137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-989133IPR009057Homeodomain-like
PfamPF002493.4E-1090134IPR001005SANT/Myb domain
CDDcd001672.51E-890135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MTXXXXXPAG GGAGDGPRRC SQCGHHGHNS RTCTARPVKL FGVRIGDKPI RKSVSMGNLA  60
QLAEGSGGAR AEGYGSEGDD DKPHRKRGES WSEEEHKNFL LGLNKLGKGD WRGISRNYVV  120
SRTPTQVASH AQKYFIRQTN VNRRKRRSSL FDMPLSRSSS QEMPLSRSSS QDVEEFVDDL  180
RPVTAPVTPP APMPVITSVS VPPPVPVMAP PAPVPMLTYA SAPSPVLAMA HQPQGNESAG  240
SSSIAGEAGM VMPQVMPPYG YPPPMMIPAP HYVQAVFPYP YYGYAPMFYG PPVSMQASSP  300
GTVQASHEPV RPVAVHSAPP VNVEDLYNMS KLNLKGDSST NGVAPNLALP PNPNGRPERQ  360
SAFHGKEPEN GSSNGLIPTK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519520.0JF951952.1 Triticum carthlicum clone TaMYB69 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170412.10.0transcription factor MYB1R1-like
TrEMBLA0A453RZ130.0A0A453RZ13_AEGTS; Uncharacterized protein
STRINGTraes_7DL_572EF99CA.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129002629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-46MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]