PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_7DL_2FE5181AF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 185aa MW: 20757.2 Da PI: 10.1108 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 97 | 152 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rrk+ ++tkeq Le F+ ++ +s+ +++eLA++l+L+ rqV vWFqNrRa+ k Traes_7DL_2FE5181AF.1 97 RRKKLRLTKEQCALLEGSFRAHNILSHVQKQELARQLNLSSRQVEVWFQNRRARTK 152 79999*************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 112.6 | 2.5e-36 | 98 | 185 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq +lLE sF++++ L++ +K+elar+L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en++L++e eLr Traes_7DL_2FE5181AF.1 98 RKKLRLTKEQCALLEGSFRAHNILSHVQKQELARQLNLSSRQVEVWFQNRRARTKLKQTEVDCEFLKRWCESLTHENQQLKHELLELR 185 69*********************************************************************************99996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-20 | 73 | 155 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-20 | 77 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.831 | 94 | 154 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-15 | 96 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.01E-13 | 97 | 155 | No hit | No description |
Pfam | PF00046 | 9.0E-17 | 97 | 152 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 8.5E-5 | 125 | 134 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 129 | 152 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.5E-5 | 134 | 150 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.5E-9 | 154 | 185 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.3E-7 | 154 | 185 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MERRDLGAWL GLATGGGAAW HTHDGERRPD PVRLDELFPQ RGKEERDHGE QVARNTGGKG 60 ARRKIKVGGD DEGRSSSSNG PCLSDGGGSD GGGGGGRRKK LRLTKEQCAL LEGSFRAHNI 120 LSHVQKQELA RQLNLSSRQV EVWFQNRRAR TKLKQTEVDC EFLKRWCESL THENQQLKHE 180 LLELR |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 95 | 102 | GRRKKLRL |
2 | 146 | 154 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180166.1 | 1e-132 | homeobox-leucine zipper protein HOX18-like | ||||
Refseq | XP_020181275.1 | 1e-132 | homeobox-leucine zipper protein HOX18-like | ||||
Swissprot | A2YGL9 | 5e-48 | HOX18_ORYSI; Homeobox-leucine zipper protein HOX18 | ||||
Swissprot | Q5Z6F6 | 5e-48 | HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18 | ||||
TrEMBL | A0A3B6TJF1 | 1e-130 | A0A3B6TJF1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453SQR7 | 1e-130 | A0A453SQR7_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453SQS4 | 1e-130 | A0A453SQS4_AEGTS; Uncharacterized protein | ||||
STRING | EMT03764 | 1e-130 | (Aegilops tauschii) | ||||
STRING | Traes_7DL_2FE5181AF.1 | 1e-130 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-36 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|