PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_2D8356B05.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 317aa    MW: 34337.6 Da    PI: 9.7342
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_2D8356B05.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.41.2e-3988164177
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            +Cqve+C+adls ak+yhr hkvCe h+ka+ v ++g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk++
  Traes_7DL_2D8356B05.1  88 RCQVEDCKADLSGAKHYHRCHKVCEYHAKAALVSAAGKQQRFCQQCSRFHLLTEFDEAKRSCRRRLAEHNRRRRKPA 164
                            6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-3281150IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.7786163IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.54E-3787166IPR004333Transcription factor, SBP-box
PfamPF031102.5E-2989162IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAPPPMPGMQ LQMPPMTMHG HGDVYPAPGM MKREGGGAGD AGRIGLNLGH RTYFSPGDML  60
AVDRMLMRSR LGGVFGLGFG RAHHQAPRCQ VEDCKADLSG AKHYHRCHKV CEYHAKAALV  120
SAAGKQQRFC QQCSRFHLLT EFDEAKRSCR RRLAEHNRRR RKPAAGSTAA SSKDSAPPSK  180
KPNAGAISSS YPADNNTLST TKSTISSNTS AISCLQQGQA SEVAATRPTA LTLGAAPEKD  240
NQQRQLRNAM QLHHHQEQQH FITSLLRNNI NNSNILSCSS VSSSTMPSAA AAANGEVSDQ  300
NNDNANNSMH MFEVDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-29891621184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145162KRSCRRRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478780.0KF447878.1 Triticum aestivum squamosa promoter-binding-like protein 20 (SPL20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146778.10.0squamosa promoter-binding-like protein 10
SwissprotA2YFT99e-92SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE89e-92SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A3B6TXN40.0A0A3B6TXN4_WHEAT; Uncharacterized protein
STRINGTraes_7DL_2D8356B05.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-33squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]