PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_1957A97EC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 321aa    MW: 35329 Da    PI: 10.7006
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_1957A97EC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.32.9e-4087163177
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            +Cqve+C+adls ak+yhrrhkvCe h+ka+ v ++g++qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rr k++
  Traes_7DL_1957A97EC.1  87 QCQVEDCKADLSGAKHYHRRHKVCEYHAKASLVSAAGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNHRRSKPA 163
                            5************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-3480149IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.34285162IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-3786165IPR004333Transcription factor, SBP-box
PfamPF031101.8E-3088161IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAPPPMSRMQ LQMPPMAMDG HSDVYPALGM VKREVGAGDE GRIGLNHGRR TYFPTGDMMA  60
VDRMLMRSRL GSVFGLGFGR AHRQPPQCQV EDCKADLSGA KHYHRRHKVC EYHAKASLVS  120
AAGKQQRFCQ QCSRFHVLTE FDEAKRSCRK RLAEHNHRRS KPAAGSARAA SKVLAPPSKK  180
PNASGISSSY ATNNNTLSAT NKSTISSNTS ATSCLKQVQA SVATARRMTL TLGVPPEKER  240
RQQQLSNAMQ LHHQREQQHF ITSLLHRNVN NSNIMSCSSV CSSTMPSVAA ANGRVSDQNN  300
NNTNGSNQAN NSMLMFEVDF M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-29881611184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146777.10.0squamosa promoter-binding-like protein 10
SwissprotA2YFT91e-88SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE81e-88SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A3B6TY850.0A0A3B6TY85_WHEAT; Uncharacterized protein
STRINGTraes_7DL_1957A97EC.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-45squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]