PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_BFA4F9A4A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 296aa MW: 32276.9 Da PI: 6.7173 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 1.9e-09 | 136 | 183 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Traes_7BS_BFA4F9A4A.1 136 SHSLAERVRRERISERMRLLQTLVPGC----DKVTGKALVLDEIINYVQSLQ 183 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.00E-10 | 130 | 187 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-16 | 130 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.358 | 132 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 132 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-6 | 136 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-9 | 138 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MADFSSVHHH SLLKMPAAFT TNDTSTPNIS SFLLYNQTSH GQSPAPANAC ATMVEDASRE 60 SSSAVLDNAS LQASASVDRK RKATDDSTTL SSAHSKDCKD GKSRRKREKS STEQDQEEAP 120 KGYIHVRARR GQATDSHSLA ERVRRERISE RMRLLQTLVP GCDKVTGKAL VLDEIINYVQ 180 SLQNQVEFLS MRIASMSPVL YGFGLDSDGL HDQAQKIGGM FQQEALAVPA PALNQASPAA 240 SQTMMDTTSY SLQGQGGISF SQSQSQDSGS YLMQSVGEQR QELLNQLVFS NMCSFQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 108 | RRKREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250810 | 0.0 | AK250810.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86g20, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188652.1 | 0.0 | transcription factor bHLH137-like | ||||
TrEMBL | A0A3B6SCD9 | 0.0 | A0A3B6SCD9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446YDD9 | 0.0 | A0A446YDD9_TRITD; Uncharacterized protein | ||||
STRING | Traes_7BS_BFA4F9A4A.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2358 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 5e-45 | bHLH family protein |
Publications ? help Back to Top | |||
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