PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BS_BA1111780.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 294aa MW: 33244.8 Da PI: 9.5084

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BS_BA1111780.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.4	6.5e-54	15	142	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 p+GfrFhPtd e+++ yL +kv +k ++ +i evd++k+ePw+Lp+k+k +ekewyfFs++d+ky+tg r+nrat+sgyWkatgkd Traes_7BS_BA1111780.1 15 PQGFRFHPTDVEIITSYLVPKVLNKAFDP-IAIGEVDLNKCEPWELPEKAKMGEKEWYFFSQKDRKYPTGIRTNRATTSGYWKATGKD 101 89**********************999.78***********99999******************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 ke++++ +++l+g+kktLvfykgrap+gekt+Wvmheyrle Traes_7BS_BA1111780.1 102 KEIFHHvTTSLIGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 142 9878889**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-60	5	177	IPR003441	NAC domain
PROSITE profile	PS51005	55.768	14	177	IPR003441	NAC domain
Pfam	PF02365	7.9E-28	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MADHLQVQRQ QLKFPQGFRF HPTDVEIITS YLVPKVLNKA FDPIAIGEVD LNKCEPWELP 60 EKAKMGEKEW YFFSQKDRKY PTGIRTNRAT TSGYWKATGK DKEIFHHVTT SLIGMKKTLV 120 FYKGRAPRGE KTNWVMHEYR LECGKQGTPG LPTDITTATA INASSKEEYV VCRIFHKSTG 180 LKKVVVSSYA IPMSMPMGAE EQHAFHESGT LPPFMGYGAS SSLVPPSSVP TSSSYQLHDV 240 GARSSMMGSA VLPMMNDHYF RNHHYQNMAT PHHDRWCRST TMTTTTSNNN NNNT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-50	11	183	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-50	11	183	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-50	11	183	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-50	11	183	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-50	11	183	17	174	NAC domain-containing protein 19
3swm_B	9e-50	11	183	17	174	NAC domain-containing protein 19
3swm_C	9e-50	11	183	17	174	NAC domain-containing protein 19
3swm_D	9e-50	11	183	17	174	NAC domain-containing protein 19
3swp_A	9e-50	11	183	17	174	NAC domain-containing protein 19
3swp_B	9e-50	11	183	17	174	NAC domain-containing protein 19
3swp_C	9e-50	11	183	17	174	NAC domain-containing protein 19
3swp_D	9e-50	11	183	17	174	NAC domain-containing protein 19
4dul_A	7e-50	11	183	14	171	NAC domain-containing protein 19
4dul_B	7e-50	11	183	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167840.1	0.0	protein CUP-SHAPED COTYLEDON 2-like
Swissprot	Q9FLJ2	1e-75	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A3B6SEP7	0.0	A0A3B6SEP7_WHEAT; Uncharacterized protein
TrEMBL	A0A446Y567	0.0	A0A446Y567_TRITD; Uncharacterized protein
STRING	Traes_7BS_BA1111780.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	7e-77	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]