PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_A0A8B25DF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 145aa MW: 15840.9 Da PI: 10.2063 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.9 | 1.5e-07 | 60 | 101 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + RR+ri +++ L+el+P+ + K++ +++L kA+ Y+k +q Traes_7BS_A0A8B25DF.1 60 AKTRRERIGERLRVLQELVPNgN------KVDMVTMLDKAITYVKFMQ 101 589******************55......****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.70E-10 | 50 | 104 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-13 | 50 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.119 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-11 | 52 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-8 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.4E-5 | 60 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
TAASPSHKRP RAHAEAQQGT EQESTTLPKK QCGGDRKSAV KPSKTSAPTS SAKDPQSDAA 60 KTRRERIGER LRVLQELVPN GNKVDMVTML DKAITYVKFM QLQLTVLETD AFWPAQGGEA 120 PEISQVKAAL DAIILSSSQQ LRQWS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158740.1 | 1e-93 | transcription factor bHLH69-like | ||||
Swissprot | Q9C707 | 3e-43 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | A0A3B6SHD1 | 2e-99 | A0A3B6SHD1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446YAL4 | 2e-99 | A0A446YAL4_TRITD; Uncharacterized protein | ||||
STRING | Traes_7BS_A0A8B25DF.1 | 1e-102 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 1e-45 | ROOT HAIR DEFECTIVE6 |