PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_9D42F9BEA.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18538.2 Da PI: 7.6739 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.6 | 7.5e-14 | 1 | 31 | 21 | 51 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51 +KKA EL +LCda+ a+i+fsstg+ly+++s Traes_7BS_9D42F9BEA.2 1 MKKARELAILCDADLALIVFSSTGRLYDFAS 31 8****************************86 PP | |||||||
2 | K-box | 73.2 | 7.7e-25 | 54 | 143 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + +++a+ +q+e++ L+++++nLq+++R+llGe+L+ ++++Lq L +q+e sl ++R++K++++ ++i+el +k +q+en +L k Traes_7BS_9D42F9BEA.2 54 NPTSEAKLWQREVTTLRQQVQNLQHNNRQLLGEELSGTTVRDLQFLVNQVEMSLHSVRKRKEQVMAAEIHELNQKGFLIQKENIELGK 141 56788999******************************************************************************99 PP K-box 97 kl 98 kl Traes_7BS_9D42F9BEA.2 142 KL 143 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.699 | 1 | 33 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-16 | 1 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-4 | 1 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-11 | 1 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.8E-24 | 56 | 143 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.265 | 59 | 149 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MKKARELAIL CDADLALIVF SSTGRLYDFA SSSGMEAILE RYQEAKEEHC GVLNPTSEAK 60 LWQREVTTLR QQVQNLQHNN RQLLGEELSG TTVRDLQFLV NQVEMSLHSV RKRKEQVMAA 120 EIHELNQKGF LIQKENIELG KKLSIAHEHN IELQKKVRNA TS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM502903 | 0.0 | AM502903.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM31C (WM31C gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171925.1 | 1e-107 | MADS-box transcription factor 25-like | ||||
Swissprot | Q84NC5 | 6e-81 | MAD25_ORYSJ; MADS-box transcription factor 25 | ||||
TrEMBL | A0A446Y1U5 | 1e-114 | A0A446Y1U5_TRITD; Uncharacterized protein | ||||
STRING | Traes_7BS_9D42F9BEA.2 | 1e-115 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-46 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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