PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_9D1E05CB7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 112aa MW: 12794.7 Da PI: 8.6945 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57 | 3.4e-18 | 16 | 106 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k +t+s+v+ +l lp +f+++h k ++ ltl+de+g + e + k++ l++GW++F+ +++L +gD +vF+l++r+ Traes_7BS_9D1E05CB7.1 16 FVKPMTQSHVTGGFWLGLPLPFCRKHLPK--RDERLTLKDEQGVESETLYLALKNG----LSAGWRGFAIQHNLVDGDCLVFELINRT 97 89************************433..4557********9999999677776....9************************988 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v ++r+ Traes_7BS_9D1E05CB7.1 98 TF--KVYIIRQ 106 88..9999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-25 | 10 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-21 | 11 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.40E-26 | 14 | 105 | No hit | No description |
PROSITE profile | PS50863 | 11.293 | 16 | 107 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-21 | 16 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-16 | 16 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MADELQAKLG SGYPSFVKPM TQSHVTGGFW LGLPLPFCRK HLPKRDERLT LKDEQGVESE 60 TLYLALKNGL SAGWRGFAIQ HNLVDGDCLV FELINRTTFK VYIIRQSSYY ER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160679.1 | 6e-80 | B3 domain-containing protein Os06g0194400-like | ||||
Swissprot | Q69V36 | 2e-52 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A3B6SAZ4 | 3e-79 | A0A3B6SAZ4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446Y710 | 3e-79 | A0A446Y710_TRITD; Uncharacterized protein | ||||
STRING | EMT13106 | 2e-79 | (Aegilops tauschii) | ||||
STRING | Traes_7BS_9D1E05CB7.1 | 1e-79 | (Triticum aestivum) | ||||
STRING | Traes_7DS_A234A13E1.2 | 2e-79 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 7e-52 | B3 family protein |
Publications ? help Back to Top | |||
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