PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BS_62FDC3C38.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 178aa MW: 20561.4 Da PI: 6.785 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.6 | 6.1e-13 | 102 | 148 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g WT++E+ l++++ G g Wk I++++ + Rtl q+ s+ qky Traes_7BS_62FDC3C38.1 102 KGFWTPDEHRLFLHGLSVCGRGKWKDISKHFVTSRTLAQISSHAQKY 148 688*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.153 | 97 | 153 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.46E-16 | 100 | 154 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-8 | 101 | 151 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-10 | 102 | 147 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.2E-9 | 103 | 148 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 7.2E-13 | 104 | 151 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 9.71E-8 | 105 | 149 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MQQVTDLYVD LSIEMHMLQC PEKECRGANS DHGVNYTMDG HAHNNFWLQE ATMEGADFLF 60 GCPLESMQTM DTQQEVPMVE QNKVVLENKM RIHQPVLGPR AKGFWTPDEH RLFLHGLSVC 120 GRGKWKDISK HFVTSRTLAQ ISSHAQKYFM RIRSKGSRSQ CYSINNVELN DADPWKME |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156757.1 | 9e-82 | uncharacterized protein LOC109742093 | ||||
TrEMBL | A0A453QR28 | 1e-110 | A0A453QR28_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7BS_62FDC3C38.1 | 1e-134 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10580.2 | 5e-19 | MYB_related family protein |
Publications ? help Back to Top | |||
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