PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BS_5D60BF43A.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 385aa    MW: 43338.2 Da    PI: 8.2548
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BS_5D60BF43A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06427226
                           -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                           k++lC+ff+  G C  G+ C F+H+
  Traes_7BS_5D60BF43A.2  4 KRVLCKFFMH-GACLKGEYCEFSHD 27
                           89****8888.*************5 PP
2zf-CCCH29.31.5e-093656526
                           --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                            C f++r G C+yG+rC++ H+
  Traes_7BS_5D60BF43A.2 36 VCTFYQR-GSCSYGNRCRYDHV 56
                           7**9999.*************7 PP
3zf-CCCH21.73.5e-07167189326
                            S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                            +++C+ fa++G C+yG+ C+ +Hg
  Traes_7BS_5D60BF43A.2 167 MPICS-FAAGGNCPYGEECPHMHG 189
                            68999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156632.7E-9162No hitNo description
PROSITE profilePS5010314.22229IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-7327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-4430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3993158IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-53257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-53355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-43655IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.76164191IPR000571Zinc finger, CCCH-type
SMARTSM003560.015164190IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4167189IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.36E-10222297No hitNo description
Gene3DG3DSA:3.30.40.109.7E-10226292IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136393.1E-7232291IPR001841Zinc finger, RING-type
CDDcd001620.00113232292No hitNo description
PROSITE profilePS5008912.297233291IPR001841Zinc finger, RING-type
SMARTSM001842.1E-7233290IPR001841Zinc finger, RING-type
PROSITE patternPS005180257266IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.648320349IPR000571Zinc finger, CCCH-type
SMARTSM003560.01320348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MSTKRVLCKF FMHGACLKGE YCEFSHDWSD QANNVVCTFY QRGSCSYGNR CRYDHVKVSR  60
NNPVPPLPSS STATRNSPLR PPPSSSTATH VASTSPQLLS SGRPLHLGHQ TNSSNQRQQI  120
SMDKLAVSES KPAWRNEVQL NSVSEDGIGW SSIQTAQNQT SMKLADMPIC SFAAGGNCPY  180
GEECPHMHGD LCAFCGKMCL HPYRPDERQE HIKLCEKNHK RLEALKRSQE IECSVCLDRV  240
LSKSTAAERK FGLLSECDHP FCISCIRNWR GNSPTSGMDV NSALRACPIC RKLSYYVIPS  300
VLWYFSKEEK LEITENYKAK LKSIDCKYFD FGTGTCPFGT SCFYKHAYRD GRLEEVVLRH  360
LDCDDGSTLI AKNIRLSDFL GRLHL
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2481880.0AK248188.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148371.10.0E3 ubiquitin-protein ligase makorin-like isoform X3
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A453RF440.0A0A453RF44_AEGTS; Uncharacterized protein
STRINGTraes_7BS_5D60BF43A.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-120C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]