PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BL_EBACA7012.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 276aa MW: 31923.2 Da PI: 8.4872

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BL_EBACA7012.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42	3e-13	82	161	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn Y+ e+GF ++ + +++ ++ t ++ vC + gk+++e+++ + ++C a +++++++d+ w ++++++eHnH+ Traes_7BL_EBACA7012.2 82 DFYNLYSWEIGFGIKYGQCRRN-VEKCKTVQDIVCGCAGKPRRENSH---------SVCCQCLALMRLHRTSDHGWFIHDVKHEHNHS 159 6*****************99.55568999*****9987666.........99***************************9 PP FAR1 89 la 90 ++ Traes_7BL_EBACA7012.2 160 MS 161 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-8	82	161	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MPYFSNVPDI DDAEETQPES HPIPVPWTQR VRLGKIPDSR ATLSGRKSAL KKAMRNYADK 60 KSEFVVKPEI GQEFDSLAEA YDFYNLYSWE IGFGIKYGQC RRNVEKCKTV QDIVCGCAGK 120 PRRENSHSVC CQCLALMRLH RTSDHGWFIH DVKHEHNHSM SQTCGEKLHW PSHRHIDAHA 180 KDIVMHLRNN NISLSKTFGV IASFFGDMEN LPFNKRSLRY LCKRMNQQQG DDDIRKTIQL 240 FSELKEKDPN FVDSVLVDEG SKIRALMWTD GKSRHQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181332.1	1e-101	putative protein FAR1-RELATED SEQUENCE 10 isoform X2
Refseq	XP_020198214.1	1e-102	protein FAR1-RELATED SEQUENCE 11-like isoform X2
TrEMBL	A0A287IJ72	1e-170	A0A287IJ72_HORVV; Uncharacterized protein
STRING	Traes_7BL_EBACA7012.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-14	FAR1-related sequence 11

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]