PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_EB1DCAB4B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 110aa MW: 12514.7 Da PI: 11.6857 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 7.1e-16 | 70 | 110 | 1 | 45 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAaka 45 ++++GVr+++ +g+Wv+eIr+p +r++lg+f taeeAa+a Traes_7BL_EB1DCAB4B.1 70 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARA 110 59*******9.**********8.....334***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.00E-24 | 70 | 110 | No hit | No description |
SuperFamily | SSF54171 | 5.23E-13 | 71 | 110 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.6E-9 | 71 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-21 | 71 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.8E-13 | 71 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.372 | 71 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-11 | 94 | 110 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
LIFTGSSRAF APPHTTLLRH SSVEEAGLTL THSLALPHCL LIIPFPLPVL FPARESPLCI 60 LQRNMVQSKK KFRGVRQRHW GSWVSEIRHP LLKRRVWLGT FETAEEAARA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374879 | 7e-94 | AK374879.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3079A21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5W425 | 5e-24 | A0A1E5W425_9POAL; Ethylene-responsive transcription factor WIN1 | ||||
STRING | Traes_7BL_EB1DCAB4B.1 | 7e-74 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 2e-25 | ERF family protein |
Publications ? help Back to Top | |||
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