PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_E5CC8C8E7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 115aa MW: 12964.9 Da PI: 10.8619 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.5e-17 | 22 | 70 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r+++ +g+W+AeIrdps+ r++lg+f aeeAa+a++ +++++g Traes_7BL_E5CC8C8E7.1 22 FRGIRQRP-SGKWAAEIRDPSK---GFRVWLGTFNIAEEAARAYDVEARRIHG 70 8*******.7*********965...38***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.654 | 21 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 21 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-30 | 21 | 79 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-10 | 22 | 68 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-20 | 22 | 79 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.8E-9 | 22 | 33 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.21E-28 | 22 | 79 | No hit | No description |
PRINTS | PR00367 | 8.8E-9 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MSTAGFDGPS ERPAKRKRKN EFRGIRQRPS GKWAAEIRDP SKGFRVWLGT FNIAEEAARA 60 YDVEARRIHG KKAKVNFPEE PAVQEPKAPK PSTAQEFTVT PLINNLVKCF RVPVC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-18 | 21 | 78 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-18 | 21 | 78 | 5 | 63 | ATERF1 |
3gcc_A | 2e-18 | 21 | 78 | 5 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ711058 | 3e-99 | FJ711058.1 Dasypyrum villosum putative ethylene responsive element binding protein (EREBP) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149547.1 | 2e-58 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 3e-42 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A446YNG5 | 6e-68 | A0A446YNG5_TRITD; Uncharacterized protein | ||||
STRING | Traes_7BL_E5CC8C8E7.1 | 5e-79 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 4e-35 | ERF family protein |