PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_C184D0525.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 338aa    MW: 36212.2 Da    PI: 9.9664
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_C184D0525.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-1497141347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
  Traes_7BL_C184D0525.1  97 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 141
                            8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.96890146IPR017930Myb domain
SuperFamilySSF466891.22E-1791146IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-1893145IPR006447Myb domain, plants
SMARTSM007171.4E-1194144IPR001005SANT/Myb domain
CDDcd001672.78E-1097142No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1297140IPR009057Homeodomain-like
PfamPF002492.0E-1297141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MPQDSRPPGM RLFGVTIAPA PQLDPPDRDR DPSPNPPVAV REDVMRKCKS MGNLAALASA  60
CPSGDAGGAG DGYLSDGGLL QSSGKRRRAQ ERKKAVPWTE EEHRTFLAGL EKLGKGDWRG  120
IAKNFVTTRT PTQVASHAQK YFLRQTNPNK KKRRSSLFDM MASDLSPAPN CPILPPTMAK  180
FHDMVTMTNQ LQNSSLEGVS SSNAANLAKQ VTRDLPPPVP SFKATNVDAS LSKMNHMDCF  240
SRVPSLFRPI PIVPEGTPPS APATANTSAL TFEANLTSCT SAFLIPRSGP SPLPPATTAK  300
TDHPAENKDL ELTVGLPSQQ NITNNISSQN AVGVIQVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149153KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519470.0JF951947.1 Triticum aestivum clone TaMYB64 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193360.10.0uncharacterized protein LOC109779160 isoform X1
TrEMBLA0A3B6SE090.0A0A3B6SE09_WHEAT; Uncharacterized protein
TrEMBLA0A446YHK70.0A0A446YHK7_TRITD; Uncharacterized protein
STRINGTraes_7BL_C184D0525.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-37MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]